RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 SPTSSBQ8NFR3 76 aa0.79□□□□□ -2.28
VPS13A-209ENST00000467124 BET1LQ9NYM9 111 aa0.79□□□□□ -2.28
VPS13A-209ENST00000467124 MYH6P13533 1939 aa0.79□□□□□ -2.28
VPS13A-209ENST00000467124 PLXNA2O75051 1894 aa0.78□□□□□ -2.28
VPS13A-209ENST00000467124 A6NIN4 97 aa0.78□□□□□ -2.28
VPS13A-209ENST00000467124 FAM25AB3EWG3 89 aa0.78□□□□□ -2.28
VPS13A-209ENST00000467124 FAM25CB3EWG5 89 aa0.78□□□□□ -2.28
VPS13A-209ENST00000467124 FAM25GB3EWG6 89 aa0.78□□□□□ -2.28
VPS13A-209ENST00000467124 HIST1H1DP16402 221 aaKnown RBP0.78□□□□□ -2.28
VPS13A-209ENST00000467124 SPINK7P58062 85 aa0.78□□□□□ -2.28
VPS13A-209ENST00000467124 C4orf33Q8N1A6 199 aa0.78□□□□□ -2.28
VPS13A-209ENST00000467124 SPTSSAQ969W0 71 aa0.78□□□□□ -2.28
VPS13A-209ENST00000467124 C9orf116Q5BN46 136 aaPredicted RBP0.77□□□□□ -2.29
VPS13A-209ENST00000467124 PDCD10Q9BUL8 212 aa0.77□□□□□ -2.29
VPS13A-209ENST00000467124 RPRMQ9NS64 109 aa0.77□□□□□ -2.29
VPS13A-209ENST00000467124 MED13LQ71F56 2210 aa0.76□□□□□ -2.29
VPS13A-209ENST00000467124 ZNF469Q96JG9 3925 aaPredicted RBP0.76□□□□□ -2.29
VPS13A-209ENST00000467124 TRAV12-2A0A075B6T6 113 aa0.76□□□□□ -2.29
VPS13A-209ENST00000467124 CCL3L1P16619 93 aa0.76□□□□□ -2.29
VPS13A-209ENST00000467124 GUCA1AP43080 201 aaPredicted RBP0.76□□□□□ -2.29
VPS13A-209ENST00000467124 EMX2Q04743 252 aa0.76□□□□□ -2.29
VPS13A-209ENST00000467124 SCIMPQ6UWF3 145 aa0.76□□□□□ -2.29
VPS13A-209ENST00000467124 NDUFA11Q86Y39 141 aa0.76□□□□□ -2.29
VPS13A-209ENST00000467124 DPH3Q96FX2 82 aa0.76□□□□□ -2.29
VPS13A-209ENST00000467124 SEC11CQ9BY50 192 aa0.76□□□□□ -2.29
VPS13A-209ENST00000467124 TMEM191AQ9H0A3 160 aa0.76□□□□□ -2.29
VPS13A-209ENST00000467124 ASH1LQ9NR48 2969 aaKnown RBP0.75□□□□□ -2.29
VPS13A-209ENST00000467124 A0A087WTM6 91 aa0.75□□□□□ -2.29
VPS13A-209ENST00000467124 PIPP12273 146 aaPredicted RBP0.75□□□□□ -2.29
VPS13A-209ENST00000467124 COX7B2Q8TF08 81 aa0.75□□□□□ -2.29
VPS13A-209ENST00000467124 PPP1R1CQ8WVI7 109 aa0.75□□□□□ -2.29
VPS13A-209ENST00000467124 ARL11Q969Q4 196 aa0.75□□□□□ -2.29
VPS13A-209ENST00000467124 VIRMAQ69YN4 1812 aaKnown RBP0.75□□□□□ -2.29
VPS13A-209ENST00000467124 ADGRB1O14514 1584 aa0.74□□□□□ -2.29
VPS13A-209ENST00000467124 A0A096LNT2 108 aa0.74□□□□□ -2.29
VPS13A-209ENST00000467124 RBAKDNA6NC62 111 aa0.74□□□□□ -2.29
VPS13A-209ENST00000467124 F2Z2F3 143 aa0.74□□□□□ -2.29
VPS13A-209ENST00000467124 KRTAP5-10Q6L8G5 202 aa0.74□□□□□ -2.29
VPS13A-209ENST00000467124 LINC00470Q9BZP3 86 aa0.74□□□□□ -2.29
VPS13A-209ENST00000467124 PAIP2BQ9ULR5 123 aaKnown RBP0.74□□□□□ -2.29
VPS13A-209ENST00000467124 MUC22E2RYF6 1773 aaPredicted RBP0.74□□□□□ -2.29
VPS13A-209ENST00000467124 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
VPS13A-209ENST00000467124 NDUFB6O95139 128 aa0.73□□□□□ -2.29
VPS13A-209ENST00000467124 SSBP1Q04837 148 aaKnown RBP0.73□□□□□ -2.29
VPS13A-209ENST00000467124 RBBP6Q7Z6E9 1792 aaKnown RBP0.73□□□□□ -2.29
VPS13A-209ENST00000467124 TMEM2Q9UHN6 1383 aa0.72□□□□□ -2.29
VPS13A-209ENST00000467124 TRBV7-1A0A0A6YYK4 115 aa0.72□□□□□ -2.29
VPS13A-209ENST00000467124 FAM74A4Q5TZK3 123 aa0.72□□□□□ -2.29
VPS13A-209ENST00000467124 CCDC167Q9P0B6 97 aa0.72□□□□□ -2.29
VPS13A-209ENST00000467124 NAV3Q8IVL0 2385 aa0.72□□□□□ -2.29
VPS13A-209ENST00000467124 F5P12259 2224 aa0.72□□□□□ -2.29
VPS13A-209ENST00000467124 KIAA0100Q14667 2235 aaKnown RBP0.72□□□□□ -2.29
VPS13A-209ENST00000467124 SELENOWP63302 87 aa0.71□□□□□ -2.3
VPS13A-209ENST00000467124 V9GYV3 84 aa0.71□□□□□ -2.3
VPS13A-209ENST00000467124 CBLN1P23435 193 aa0.7□□□□□ -2.3
VPS13A-209ENST00000467124 RBM3P98179 157 aaKnown RBP0.7□□□□□ -2.3
VPS13A-209ENST00000467124 MEIG1Q5JSS6 88 aa0.7□□□□□ -2.3
VPS13A-209ENST00000467124 Q96NJ1 140 aa0.7□□□□□ -2.3
VPS13A-209ENST00000467124 MUC5ACP98088 5654 aa0.7□□□□□ -2.3
VPS13A-209ENST00000467124 GRIN2AQ12879 1464 aa0.69□□□□□ -2.3
VPS13A-209ENST00000467124 K7EP13 123 aa0.69□□□□□ -2.3
VPS13A-209ENST00000467124 ACYP2P14621 99 aa0.69□□□□□ -2.3
VPS13A-209ENST00000467124 UBE2D1P51668 147 aa0.69□□□□□ -2.3
VPS13A-209ENST00000467124 EDDM3BP56851 147 aa0.69□□□□□ -2.3
VPS13A-209ENST00000467124 LSM10Q969L4 123 aaKnown RBP0.69□□□□□ -2.3
VPS13A-209ENST00000467124 AGPAT4-IT1Q9H0P7 198 aa0.69□□□□□ -2.3
VPS13A-209ENST00000467124 MYOM3Q5VTT5 1437 aa0.69□□□□□ -2.3
VPS13A-209ENST00000467124 TANC1Q9C0D5 1861 aa0.69□□□□□ -2.3
VPS13A-209ENST00000467124 ZNF142P52746 1687 aaPredicted RBP0.69□□□□□ -2.3
VPS13A-209ENST00000467124 TRGV1A0A0A0MS02 117 aa0.68□□□□□ -2.3
VPS13A-209ENST00000467124 LOC100130705A0A1B0GUX0 176 aa0.68□□□□□ -2.3
VPS13A-209ENST00000467124 FAM92AA1XBS5 289 aa0.68□□□□□ -2.3
VPS13A-209ENST00000467124 CLPSL1A2RUU4 121 aa0.68□□□□□ -2.3
VPS13A-209ENST00000467124 IFNA17P01571 189 aa0.68□□□□□ -2.3
VPS13A-209ENST00000467124 SPEF2Q9C093 1822 aa0.68□□□□□ -2.3
VPS13A-209ENST00000467124 JMJD1CQ15652 2540 aa0.68□□□□□ -2.3
VPS13A-209ENST00000467124 AKAP11Q9UKA4 1901 aa0.68□□□□□ -2.3
VPS13A-209ENST00000467124 GVQW2A0A096LPI5 108 aaPredicted RBP0.67□□□□□ -2.3
VPS13A-209ENST00000467124 SARNPP82979 210 aaKnown RBP0.67□□□□□ -2.3
VPS13A-209ENST00000467124 PRR15LQ9BU68 103 aa0.67□□□□□ -2.3
VPS13A-209ENST00000467124 LINC00312Q9Y6C7 94 aa0.67□□□□□ -2.3
VPS13A-209ENST00000467124 NRXN2Q9P2S2 1712 aa0.67□□□□□ -2.3
VPS13A-209ENST00000467124 PRH1P02810 166 aa0.66□□□□□ -2.3
VPS13A-209ENST00000467124 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.66□□□□□ -2.3
VPS13A-209ENST00000467124 BPESC1Q9GZL8 116 aa0.66□□□□□ -2.3
VPS13A-209ENST00000467124 PLAC8Q9NZF1 115 aa0.66□□□□□ -2.3
VPS13A-209ENST00000467124 PHLPP1O60346 1717 aa0.66□□□□□ -2.3
VPS13A-209ENST00000467124 PHIPQ8WWQ0 1821 aa0.66□□□□□ -2.3
VPS13A-209ENST00000467124 MEGF8Q7Z7M0 2845 aa0.65□□□□□ -2.3
VPS13A-209ENST00000467124 TRBV10-3A0A0K0K1G6 114 aa0.65□□□□□ -2.31
VPS13A-209ENST00000467124 KRTAP2-3P0C7H8 128 aa0.65□□□□□ -2.31
VPS13A-209ENST00000467124 INSL4Q14641 139 aa0.65□□□□□ -2.31
VPS13A-209ENST00000467124 KRTAP2-4Q9BYR9 128 aa0.65□□□□□ -2.31
VPS13A-209ENST00000467124 KRTAP2-1Q9BYU5 128 aa0.65□□□□□ -2.31
VPS13A-209ENST00000467124 DAPK1P53355 1430 aa0.64□□□□□ -2.31
VPS13A-209ENST00000467124 TNS1Q9HBL0 1735 aaKnown RBP0.64□□□□□ -2.31
VPS13A-209ENST00000467124 ARFGEF1Q9Y6D6 1849 aa0.64□□□□□ -2.31
VPS13A-209ENST00000467124 A0A1B0GV90 55 aa0.64□□□□□ -2.31
VPS13A-209ENST00000467124 SPAARA0A1B0GVQ0 90 aa0.64□□□□□ -2.31
VPS13A-209ENST00000467124 RPL13AP3Q6NVV1 102 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms