RNA–Protein interactions for RNA: ENST00000465425.1

SYNE4-204, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 2

Gene SYNE4, Length 2,339 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-204ENST00000465425 SDHAF1A6NFY7 115 aa13.65□□□□□ -0.22
SYNE4-204ENST00000465425 K7EQG2 157 aa13.65□□□□□ -0.22
SYNE4-204ENST00000465425 DEFB104AQ8WTQ1 72 aa13.65□□□□□ -0.22
SYNE4-204ENST00000465425 IGHV3-16A0A0C4DH30 117 aa13.64□□□□□ -0.23
SYNE4-204ENST00000465425 PRADC1Q9BSG0 188 aa13.64□□□□□ -0.23
SYNE4-204ENST00000465425 LGALS1P09382 135 aaKnown RBP13.64□□□□□ -0.23
SYNE4-204ENST00000465425 C9orf85Q96MD7 179 aa13.64□□□□□ -0.23
SYNE4-204ENST00000465425 MDFICQ9P1T7 246 aa13.64□□□□□ -0.23
SYNE4-204ENST00000465425 VPREB3Q9UKI3 123 aa13.64□□□□□ -0.23
SYNE4-204ENST00000465425 UTP20O75691 2785 aaKnown RBP13.64□□□□□ -0.23
SYNE4-204ENST00000465425 SAP30O75446 220 aa13.63□□□□□ -0.23
SYNE4-204ENST00000465425 ZNF56Q15929 161 aa13.63□□□□□ -0.23
SYNE4-204ENST00000465425 SPINK13Q1W4C9 94 aa13.63□□□□□ -0.23
SYNE4-204ENST00000465425 Q8N1Y9 231 aa13.63□□□□□ -0.23
SYNE4-204ENST00000465425 CACNA1AO00555 2505 aa13.63□□□□□ -0.23
SYNE4-204ENST00000465425 LGALS9O00182 355 aa13.63□□□□□ -0.23
SYNE4-204ENST00000465425 C12orf74Q32Q52 190 aa13.63□□□□□ -0.23
SYNE4-204ENST00000465425 MYO18BQ8IUG5 2567 aa13.63□□□□□ -0.23
SYNE4-204ENST00000465425 LINC01619G3V211 115 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 PAPPA-AS1Q5QFB9 102 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 DUX5Q96PT3 197 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 TRBV7-3A0A075B6L6 115 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 IGHV1OR15-1A0A075B7D0 117 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 IGIPA6NJ69 53 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 ZNF815PA8K554 130 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 CRYGDP07320 174 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 ELANEP08246 267 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 RPL39P62891 51 aaKnown RBP13.62□□□□□ -0.23
SYNE4-204ENST00000465425 SCGB1D4Q6XE38 83 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 TMEM141Q96I45 108 aa13.62□□□□□ -0.23
SYNE4-204ENST00000465425 A0A096LNT2 108 aa13.61□□□□□ -0.23
SYNE4-204ENST00000465425 HOXD3P31249 432 aaPredicted RBP13.61□□□□□ -0.23
SYNE4-204ENST00000465425 PMVKQ15126 192 aa13.61□□□□□ -0.23
SYNE4-204ENST00000465425 ZNF479Q96JC4 524 aa13.61□□□□□ -0.23
SYNE4-204ENST00000465425 TRBV27A0A0K0K1C4 114 aa13.61□□□□□ -0.23
SYNE4-204ENST00000465425 IGLL5B9A064 214 aa13.61□□□□□ -0.23
SYNE4-204ENST00000465425 TSHBP01222 138 aa13.61□□□□□ -0.23
SYNE4-204ENST00000465425 HERVK_113P61574 105 aa13.61□□□□□ -0.23
SYNE4-204ENST00000465425 CD300EQ496F6 205 aaPredicted RBP13.61□□□□□ -0.23
SYNE4-204ENST00000465425 ZNF256Q9Y2P7 627 aaPredicted RBP13.61□□□□□ -0.23
SYNE4-204ENST00000465425 TRBV6-5A0A0K0K1A5 114 aa13.6□□□□□ -0.23
SYNE4-204ENST00000465425 TIMM17AQ99595 171 aa13.6□□□□□ -0.23
SYNE4-204ENST00000465425 EMP1P54849 157 aa13.59□□□□□ -0.23
SYNE4-204ENST00000465425 UBE2E2Q96LR5 201 aa13.59□□□□□ -0.23
SYNE4-204ENST00000465425 USP9YO00507 2555 aaPredicted RBP13.59□□□□□ -0.23
SYNE4-204ENST00000465425 C11orf86A6NJI1 115 aa13.59□□□□□ -0.23
SYNE4-204ENST00000465425 COX6B1P14854 86 aa13.59□□□□□ -0.23
SYNE4-204ENST00000465425 AGRNO00468 2067 aa13.59□□□□□ -0.23
SYNE4-204ENST00000465425 IGLV4-69A0A075B6H9 119 aa13.58□□□□□ -0.23
SYNE4-204ENST00000465425 FOXI2Q6ZQN5 318 aa13.58□□□□□ -0.23
SYNE4-204ENST00000465425 M0QY20 66 aa13.58□□□□□ -0.24
SYNE4-204ENST00000465425 RIPPLY3P57055 190 aa13.58□□□□□ -0.24
SYNE4-204ENST00000465425 Q6YL49 198 aa13.58□□□□□ -0.24
SYNE4-204ENST00000465425 ANKRD17O75179 2603 aaKnown RBP13.58□□□□□ -0.24
SYNE4-204ENST00000465425 ZNF876PQ49A33 203 aa13.57□□□□□ -0.24
SYNE4-204ENST00000465425 ZNF702PQ9H963 129 aa13.57□□□□□ -0.24
SYNE4-204ENST00000465425 ACACBO00763 2458 aa13.57□□□□□ -0.24
SYNE4-204ENST00000465425 SRSF9Q13242 221 aaKnown RBP eCLIP13.57□□□□□ -0.24
SYNE4-204ENST00000465425 TRPT1Q86TN4 253 aaKnown RBP13.57□□□□□ -0.24
SYNE4-204ENST00000465425 DOPEY2Q9Y3R5 2298 aa13.57□□□□□ -0.24
SYNE4-204ENST00000465425 TRGV11A0A075B6L2 103 aa13.56□□□□□ -0.24
SYNE4-204ENST00000465425 TMEM238LA0A1B0GVL6 79 aa13.56□□□□□ -0.24
SYNE4-204ENST00000465425 A6NJY4 79 aa13.56□□□□□ -0.24
SYNE4-204ENST00000465425 TCTEX1D4Q5JR98 221 aa13.56□□□□□ -0.24
SYNE4-204ENST00000465425 G3V4G9 280 aa13.56□□□□□ -0.24
SYNE4-204ENST00000465425 HOXA3O43365 443 aaPredicted RBP13.56□□□□□ -0.24
SYNE4-204ENST00000465425 TMEM170BQ5T4T1 132 aa13.56□□□□□ -0.24
SYNE4-204ENST00000465425 KLHL30-AS1Q8NEE0 82 aa13.56□□□□□ -0.24
SYNE4-204ENST00000465425 BEX4Q9NWD9 120 aaPredicted RBP13.56□□□□□ -0.24
SYNE4-204ENST00000465425 ZANQ9Y493 2812 aa13.55□□□□□ -0.24
SYNE4-204ENST00000465425 A0A1B0GWB2 263 aa13.55□□□□□ -0.24
SYNE4-204ENST00000465425 RPL24P83731 157 aaKnown RBP13.54□□□□□ -0.24
SYNE4-204ENST00000465425 RHOHQ15669 191 aa13.54□□□□□ -0.24
SYNE4-204ENST00000465425 RRN3P1Q2M238 152 aa13.54□□□□□ -0.24
SYNE4-204ENST00000465425 MORN3Q6PF18 240 aaPredicted RBP13.54□□□□□ -0.24
SYNE4-204ENST00000465425 PLEKHB2Q96CS7 222 aa13.54□□□□□ -0.24
SYNE4-204ENST00000465425 HTN1P15515 57 aa13.53□□□□□ -0.24
SYNE4-204ENST00000465425 NSUN5P1Q3KNT7 163 aa13.53□□□□□ -0.24
SYNE4-204ENST00000465425 AMTNQ6UX39 209 aa13.53□□□□□ -0.24
SYNE4-204ENST00000465425 IGHV4-31P0DP07 118 aa13.53□□□□□ -0.24
SYNE4-204ENST00000465425 POLQO75417 2590 aa13.53□□□□□ -0.24
SYNE4-204ENST00000465425 FSHBP01225 129 aa13.52□□□□□ -0.24
SYNE4-204ENST00000465425 FAM208BQ5VWN6 2430 aa13.52□□□□□ -0.25
SYNE4-204ENST00000465425 F8W1H4 67 aa13.52□□□□□ -0.25
SYNE4-204ENST00000465425 PRB1P04280 392 aa13.52□□□□□ -0.25
SYNE4-204ENST00000465425 SLURP1P55000 103 aa13.52□□□□□ -0.25
SYNE4-204ENST00000465425 DEFB136Q30KP8 78 aa13.52□□□□□ -0.25
SYNE4-204ENST00000465425 RNF152Q8N8N0 203 aa13.52□□□□□ -0.25
SYNE4-204ENST00000465425 CREBBPQ92793 2442 aa13.52□□□□□ -0.25
SYNE4-204ENST00000465425 FBN2P35556 2912 aa13.52□□□□□ -0.25
SYNE4-204ENST00000465425 KNCNA6PVL3 124 aa13.51□□□□□ -0.25
SYNE4-204ENST00000465425 H3BMG7 143 aa13.51□□□□□ -0.25
SYNE4-204ENST00000465425 I3L3M4 83 aa13.51□□□□□ -0.25
SYNE4-204ENST00000465425 ZNRF2Q8NHG8 242 aa13.51□□□□□ -0.25
SYNE4-204ENST00000465425 SORL1Q92673 2214 aa13.51□□□□□ -0.25
SYNE4-204ENST00000465425 DEFB131AP59861 70 aa13.51□□□□□ -0.25
SYNE4-204ENST00000465425 MRPL16Q9NX20 251 aaKnown RBP13.51□□□□□ -0.25
SYNE4-204ENST00000465425 PGPEP1Q9NXJ5 209 aa13.5□□□□□ -0.25
SYNE4-204ENST00000465425 CENPEQ02224 2701 aa13.5□□□□□ -0.25
SYNE4-204ENST00000465425 COTL1Q14019 142 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms