RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 AK6Q9Y3D8 172 aaKnown RBP1.25□□□□□ -2.21
USP40-211ENST00000464956 IRGMA1A4Y4 181 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 SMCO3A2RU48 225 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 A8MWP4 228 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 HMGB1P1B2RPK0 211 aaPredicted RBP1.24□□□□□ -2.21
USP40-211ENST00000464956 AGPAT2O15120 278 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 UCHL1P09936 223 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 RNASE3P12724 160 aaKnown RBP1.24□□□□□ -2.21
USP40-211ENST00000464956 LCE4AQ5TA78 99 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 Q5VV11 94 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 PATE2Q6UY27 113 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 ATP11AUNQ6ZP68 121 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 Q8NDZ9 215 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 TERB2Q8NHR7 220 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 BCL7BQ9BQE9 202 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 SLC25A21Q9BQT8 299 aaPredicted RBP1.24□□□□□ -2.21
USP40-211ENST00000464956 FXYD6Q9H0Q3 95 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 JPT2Q9H910 190 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 V9GY05 133 aa1.24□□□□□ -2.21
USP40-211ENST00000464956 TRAV34A0A0B4J273 112 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 C3orf85A0A1B0GTC6 90 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 M0R036 132 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 CCL25O15444 150 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 B3GALNT1O75752 331 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 ARL6IP5O75915 188 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 TCRAP04437 139 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 TLX1NBP0CAT3 122 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 PRDX6P30041 224 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 TAS2R46P59540 309 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 ARL16Q0P5N6 197 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 TMEM241Q24JQ0 296 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 IAH1Q2TAA2 248 aaPredicted RBP1.23□□□□□ -2.21
USP40-211ENST00000464956 C10orf113Q5VZT2 155 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 AMMECR1LQ6DCA0 310 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 IZUMO2Q6UXV1 221 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 KRTAP13-1Q8IUC0 172 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 OR11H4Q8NGC9 324 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 PACRGQ96M98 296 aaPredicted RBP1.23□□□□□ -2.21
USP40-211ENST00000464956 TP53RKQ96S44 253 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 GFI1Q99684 422 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 IMUPQ9GZP8 106 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 SLIRPQ9GZT3 109 aaKnown RBP1.23□□□□□ -2.21
USP40-211ENST00000464956 SMDT1Q9H4I9 107 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 DUSP21Q9H596 190 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 MRPL35Q9NZE8 188 aaKnown RBP1.23□□□□□ -2.21
USP40-211ENST00000464956 IL36BQ9NZH7 164 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 DIMT1Q9UNQ2 313 aaKnown RBP1.23□□□□□ -2.21
USP40-211ENST00000464956 C22orf24Q9Y442 160 aa1.23□□□□□ -2.21
USP40-211ENST00000464956 F6UZH7 168 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 F8WDY8 70 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 GOSR2O14653 212 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 NDUFA1O15239 70 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 TSC22D2O75157 780 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 FKBP6O75344 327 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 PMP2P02689 132 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 SULT1A3P0DMM9 295 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 SULT1A4P0DMN0 295 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 AKR1C4P17516 323 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 NTF3P20783 257 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 CTRLP40313 264 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 UCP3P55916 312 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 RAB4BP61018 213 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 RND3P61587 244 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 SPAG11BQ08648 103 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 ZNF56Q15929 161 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 CD164L2Q6UWJ8 174 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 FAM231DQ6ZW35 169 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 MRPL55Q7Z7F7 128 aaKnown RBP1.22□□□□□ -2.21
USP40-211ENST00000464956 DEFB107AQ8IZN7 70 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 C12orf45Q8N5I9 185 aaPredicted RBP1.22□□□□□ -2.21
USP40-211ENST00000464956 OR51S1Q8NGJ8 323 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 TMED6Q8WW62 240 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 PLEKHB2Q96CS7 222 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 SFRP2Q96HF1 295 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 CCDC32Q9BV29 185 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 GNB1LQ9BYB4 327 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 GABARAPL1Q9H0R8 117 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 RBKSQ9H477 322 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 GEMIN7Q9H840 131 aaKnown RBP1.22□□□□□ -2.21
USP40-211ENST00000464956 TREM1Q9NP99 234 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 SCN3BQ9NY72 215 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 EXTL2Q9UBQ6 330 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 ORC6Q9Y5N6 252 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 ZNF706Q9Y5V0 76 aaPredicted RBP1.22□□□□□ -2.21
USP40-211ENST00000464956 HMCN1Q96RW7 5635 aa1.22□□□□□ -2.21
USP40-211ENST00000464956 AHNAKQ09666 5890 aaKnown RBP1.22□□□□□ -2.21
USP40-211ENST00000464956 MUC5BQ9HC84 5762 aaPredicted RBP1.21□□□□□ -2.22
USP40-211ENST00000464956 LINC00959A0A1B0GUT2 108 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 EFCAB10A6NFE3 127 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 RPL37AP8A6NKH3 93 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 AQP12BA6NM10 295 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 IFITM5A6NNB3 132 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 FNDC10F2Z333 226 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 COX7A2LO14548 114 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 PDCD5O14737 125 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 MYL12BO14950 172 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 RCVRNP35243 200 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 PRLHP81277 87 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 Q6ZRG5 221 aa1.21□□□□□ -2.22
USP40-211ENST00000464956 LINC01551Q86U37 167 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms