RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 H3BVH4 76 aa12.62□□□□□ -0.39
SF3A1-205ENST00000463818 M0R036 132 aa12.62□□□□□ -0.39
SF3A1-205ENST00000463818 SH2D1AO60880 128 aa12.62□□□□□ -0.39
SF3A1-205ENST00000463818 ARMS2P0C7Q2 107 aa12.62□□□□□ -0.39
SF3A1-205ENST00000463818 UFSP1Q6NVU6 142 aa12.62□□□□□ -0.39
SF3A1-205ENST00000463818 Q9UF83 564 aa12.62□□□□□ -0.39
SF3A1-205ENST00000463818 TRBV6-1A0A0K0K1D8 114 aa12.61□□□□□ -0.39
SF3A1-205ENST00000463818 UBE2G1P62253 170 aa12.61□□□□□ -0.39
SF3A1-205ENST00000463818 DNLZQ5SXM8 178 aa12.61□□□□□ -0.39
SF3A1-205ENST00000463818 CST9LP1Q5W188 147 aa12.61□□□□□ -0.39
SF3A1-205ENST00000463818 FMC1Q96HJ9 113 aa12.61□□□□□ -0.39
SF3A1-205ENST00000463818 LINC00694P0DN24 101 aa12.6□□□□□ -0.39
SF3A1-205ENST00000463818 FAM162BQ5T6X4 162 aa12.6□□□□□ -0.39
SF3A1-205ENST00000463818 C14orf178Q8N769 122 aaPredicted RBP12.6□□□□□ -0.39
SF3A1-205ENST00000463818 SYT8Q8NBV8 401 aa12.6□□□□□ -0.39
SF3A1-205ENST00000463818 IGLV5-52A0A0A0MRZ9 124 aa12.59□□□□□ -0.39
SF3A1-205ENST00000463818 ZNF674Q2M3X9 581 aa12.59□□□□□ -0.39
SF3A1-205ENST00000463818 TMSB15BA0A087X1C1 80 aa12.58□□□□□ -0.4
SF3A1-205ENST00000463818 PAGE4O60829 102 aa12.58□□□□□ -0.4
SF3A1-205ENST00000463818 Q8N3U1 123 aa12.58□□□□□ -0.4
SF3A1-205ENST00000463818 MANBALQ9NQG1 85 aa12.58□□□□□ -0.4
SF3A1-205ENST00000463818 PHLDA3Q9Y5J5 127 aa12.58□□□□□ -0.4
SF3A1-205ENST00000463818 FAT1Q14517 4588 aa12.57□□□□□ -0.4
SF3A1-205ENST00000463818 RHODO00212 210 aa12.57□□□□□ -0.4
SF3A1-205ENST00000463818 LTAP01374 205 aa12.57□□□□□ -0.4
SF3A1-205ENST00000463818 LAGE3Q14657 143 aa12.57□□□□□ -0.4
SF3A1-205ENST00000463818 LINC01559Q495D7 138 aa12.57□□□□□ -0.4
SF3A1-205ENST00000463818 Q8N814 137 aa12.57□□□□□ -0.4
SF3A1-205ENST00000463818 NTN5Q8WTR8 489 aaPredicted RBP12.57□□□□□ -0.4
SF3A1-205ENST00000463818 SFRP2Q96HF1 295 aa12.57□□□□□ -0.4
SF3A1-205ENST00000463818 TEX46H3BTG2 121 aa12.56□□□□□ -0.4
SF3A1-205ENST00000463818 AKR1C3P42330 323 aa12.56□□□□□ -0.4
SF3A1-205ENST00000463818 FAM74A4Q5TZK3 123 aa12.56□□□□□ -0.4
SF3A1-205ENST00000463818 TM2D2Q9BX73 214 aa12.56□□□□□ -0.4
SF3A1-205ENST00000463818 A0A087WWC5 75 aa12.55□□□□□ -0.4
SF3A1-205ENST00000463818 A0A087WWL8 130 aa12.55□□□□□ -0.4
SF3A1-205ENST00000463818 M0R381 172 aa12.55□□□□□ -0.4
SF3A1-205ENST00000463818 CCL20P78556 96 aa12.55□□□□□ -0.4
SF3A1-205ENST00000463818 DAZ4Q86SG3 579 aaKnown RBP12.55□□□□□ -0.4
SF3A1-205ENST00000463818 C11orf52Q96A22 123 aa12.55□□□□□ -0.4
SF3A1-205ENST00000463818 DAZ3Q9NR90 486 aaKnown RBP12.55□□□□□ -0.4
SF3A1-205ENST00000463818 SMR3BP02814 79 aaPredicted RBP12.54□□□□□ -0.4
SF3A1-205ENST00000463818 NKX2-5P52952 324 aaPredicted RBP12.54□□□□□ -0.4
SF3A1-205ENST00000463818 LYPD6BQ8NI32 183 aa12.54□□□□□ -0.4
SF3A1-205ENST00000463818 FRZBQ92765 325 aa12.54□□□□□ -0.4
SF3A1-205ENST00000463818 TRAV8-3A0A0A6YYJ7 113 aa12.53□□□□□ -0.4
SF3A1-205ENST00000463818 A0A1B0GV50 99 aa12.53□□□□□ -0.4
SF3A1-205ENST00000463818 S100A9P06702 114 aaKnown RBP12.53□□□□□ -0.4
SF3A1-205ENST00000463818 INAFM2P0DMQ5 153 aa12.53□□□□□ -0.4
SF3A1-205ENST00000463818 Q5VSD8 79 aa12.53□□□□□ -0.4
SF3A1-205ENST00000463818 ZFP82Q8N141 532 aa12.53□□□□□ -0.4
SF3A1-205ENST00000463818 HAMPP81172 84 aa12.52□□□□□ -0.41
SF3A1-205ENST00000463818 TOR2AQ5JU69 321 aa12.52□□□□□ -0.41
SF3A1-205ENST00000463818 SCO2A0A1W2PP80 73 aa12.51□□□□□ -0.41
SF3A1-205ENST00000463818 TAGLN2P37802 199 aaKnown RBP12.51□□□□□ -0.41
SF3A1-205ENST00000463818 WFDC2Q14508 124 aa12.51□□□□□ -0.41
SF3A1-205ENST00000463818 ALKAL2Q6UX46 152 aa12.51□□□□□ -0.41
SF3A1-205ENST00000463818 TMEM70Q9BUB7 260 aa12.51□□□□□ -0.41
SF3A1-205ENST00000463818 MLST8Q9BVC4 326 aa12.51□□□□□ -0.41
SF3A1-205ENST00000463818 GNG13Q9P2W3 67 aa12.51□□□□□ -0.41
SF3A1-205ENST00000463818 MEF2BQ02080 365 aaPredicted RBP12.5□□□□□ -0.41
SF3A1-205ENST00000463818 BAGE2Q86Y30 109 aa12.5□□□□□ -0.41
SF3A1-205ENST00000463818 IFNA1P01562 189 aa12.49□□□□□ -0.41
SF3A1-205ENST00000463818 BCL2P10415 239 aa12.49□□□□□ -0.41
SF3A1-205ENST00000463818 RPL19P84098 196 aaKnown RBP12.49□□□□□ -0.41
SF3A1-205ENST00000463818 NIT1Q86X76 327 aa12.49□□□□□ -0.41
SF3A1-205ENST00000463818 URGCP-MRPS24S4R325 110 aa12.49□□□□□ -0.41
SF3A1-205ENST00000463818 TRBV10-1A0A0K0K1A3 114 aa12.48□□□□□ -0.41
SF3A1-205ENST00000463818 LECT2O14960 151 aa12.48□□□□□ -0.41
SF3A1-205ENST00000463818 BLOC1S1P78537 153 aa12.48□□□□□ -0.41
SF3A1-205ENST00000463818 RPL36AP83881 106 aaKnown RBP12.48□□□□□ -0.41
SF3A1-205ENST00000463818 RPL36ALQ969Q0 106 aaKnown RBP12.48□□□□□ -0.41
SF3A1-205ENST00000463818 FAM30AQ9NZY2 134 aa12.48□□□□□ -0.41
SF3A1-205ENST00000463818 DNAH8Q96JB1 4490 aa12.48□□□□□ -0.41
SF3A1-205ENST00000463818 VPS13BQ7Z7G8 4022 aa12.47□□□□□ -0.41
SF3A1-205ENST00000463818 FAM229AH3BQW9 127 aa12.47□□□□□ -0.41
SF3A1-205ENST00000463818 PDE6DO43924 150 aa12.47□□□□□ -0.41
SF3A1-205ENST00000463818 UBE2D3P61077 147 aa12.47□□□□□ -0.41
SF3A1-205ENST00000463818 UBE2D2P62837 147 aa12.47□□□□□ -0.41
SF3A1-205ENST00000463818 OR10AG1Q8NH19 301 aa12.47□□□□□ -0.41
SF3A1-205ENST00000463818 BAALCQ8WXS3 180 aa12.47□□□□□ -0.41
SF3A1-205ENST00000463818 KLK12Q9UKR0 248 aa12.47□□□□□ -0.41
SF3A1-205ENST00000463818 COX11Q9Y6N1 276 aa12.47□□□□□ -0.41
SF3A1-205ENST00000463818 TRBV7-3A0A075B6L6 115 aa12.46□□□□□ -0.41
SF3A1-205ENST00000463818 SMIM12Q96EX1 92 aa12.46□□□□□ -0.41
SF3A1-205ENST00000463818 DNAJC30Q96LL9 226 aa12.46□□□□□ -0.41
SF3A1-205ENST00000463818 VAX2Q9UIW0 290 aa12.46□□□□□ -0.41
SF3A1-205ENST00000463818 MUC21A0A0G2JKD1 596 aa12.45□□□□□ -0.42
SF3A1-205ENST00000463818 MUC21A0A140T8X8 626 aa12.45□□□□□ -0.42
SF3A1-205ENST00000463818 NDUFS6O75380 124 aaKnown RBP12.45□□□□□ -0.42
SF3A1-205ENST00000463818 CXCL1P09341 107 aa12.45□□□□□ -0.42
SF3A1-205ENST00000463818 RPL35P42766 123 aaKnown RBP12.45□□□□□ -0.42
SF3A1-205ENST00000463818 RAB4BP61018 213 aa12.45□□□□□ -0.42
SF3A1-205ENST00000463818 PRR27Q6MZM9 219 aa12.45□□□□□ -0.42
SF3A1-205ENST00000463818 RMI2Q96E14 147 aa12.45□□□□□ -0.42
SF3A1-205ENST00000463818 SSBP4Q9BWG4 385 aaPredicted RBP12.45□□□□□ -0.42
SF3A1-205ENST00000463818 A0A087WX48 190 aa12.44□□□□□ -0.42
SF3A1-205ENST00000463818 SNAI2O43623 268 aa12.44□□□□□ -0.42
SF3A1-205ENST00000463818 OR10G8Q8NGN5 311 aa12.44□□□□□ -0.42
SF3A1-205ENST00000463818 DERL1Q9BUN8 251 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms