RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 VPS13BQ7Z7G8 4022 aa10.16□□□□□ -0.78
SKA3-204ENST00000462482 KRBOX1C9JBD0 128 aa10.16□□□□□ -0.78
SKA3-204ENST00000462482 RPL36AP83881 106 aaKnown RBP10.16□□□□□ -0.78
SKA3-204ENST00000462482 FAM162BQ5T6X4 162 aa10.16□□□□□ -0.78
SKA3-204ENST00000462482 RPL7L1Q6DKI1 246 aaKnown RBP10.16□□□□□ -0.78
SKA3-204ENST00000462482 UFSP1Q6NVU6 142 aa10.16□□□□□ -0.78
SKA3-204ENST00000462482 Q6ZSA8 131 aa10.16□□□□□ -0.78
SKA3-204ENST00000462482 NIT1Q86X76 327 aa10.16□□□□□ -0.78
SKA3-204ENST00000462482 RPL36ALQ969Q0 106 aaKnown RBP10.16□□□□□ -0.78
SKA3-204ENST00000462482 CHCHD7Q9BUK0 85 aa10.16□□□□□ -0.78
SKA3-204ENST00000462482 KLK12Q9UKR0 248 aa10.16□□□□□ -0.78
SKA3-204ENST00000462482 FXYD6-FXYD2A0A087WZ82 144 aa10.15□□□□□ -0.78
SKA3-204ENST00000462482 GRIFINA4D1Z8 144 aa10.15□□□□□ -0.78
SKA3-204ENST00000462482 M0R381 172 aa10.15□□□□□ -0.78
SKA3-204ENST00000462482 SH2D1AO60880 128 aa10.15□□□□□ -0.78
SKA3-204ENST00000462482 GIPP09681 153 aaPredicted RBP10.15□□□□□ -0.78
SKA3-204ENST00000462482 DNLZQ5SXM8 178 aa10.15□□□□□ -0.78
SKA3-204ENST00000462482 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.15□□□□□ -0.78
SKA3-204ENST00000462482 UBE2WQ96B02 151 aa10.15□□□□□ -0.78
SKA3-204ENST00000462482 FMC1Q96HJ9 113 aa10.15□□□□□ -0.78
SKA3-204ENST00000462482 FLG2Q5D862 2391 aaPredicted RBP10.15□□□□□ -0.79
SKA3-204ENST00000462482 A0A087WWL8 130 aa10.14□□□□□ -0.79
SKA3-204ENST00000462482 TRBV10-1A0A0K0K1A3 114 aa10.14□□□□□ -0.79
SKA3-204ENST00000462482 FAM74A7A6NL05 159 aa10.14□□□□□ -0.79
SKA3-204ENST00000462482 PTTG1O95997 202 aa10.14□□□□□ -0.79
SKA3-204ENST00000462482 Q0VG73 95 aa10.14□□□□□ -0.79
SKA3-204ENST00000462482 ZFP82Q8N141 532 aa10.14□□□□□ -0.79
SKA3-204ENST00000462482 STOML3Q8TAV4 291 aa10.14□□□□□ -0.79
SKA3-204ENST00000462482 ZC2HC1AQ96GY0 325 aa10.14□□□□□ -0.79
SKA3-204ENST00000462482 SFRP2Q96HF1 295 aa10.14□□□□□ -0.79
SKA3-204ENST00000462482 Q9UF83 564 aa10.14□□□□□ -0.79
SKA3-204ENST00000462482 TMSB15BA0A087X1C1 80 aa10.13□□□□□ -0.79
SKA3-204ENST00000462482 TMEM262E9PQX1 116 aa10.13□□□□□ -0.79
SKA3-204ENST00000462482 ZNF726P1Q15940 193 aa10.13□□□□□ -0.79
SKA3-204ENST00000462482 C14orf177Q52M58 125 aa10.13□□□□□ -0.79
SKA3-204ENST00000462482 TCEAL7Q9BRU2 100 aa10.13□□□□□ -0.79
SKA3-204ENST00000462482 MYCBP2O75592 4640 aa10.13□□□□□ -0.79
SKA3-204ENST00000462482 RNF222A6NCQ9 220 aa10.12□□□□□ -0.79
SKA3-204ENST00000462482 CRPP02741 224 aa10.12□□□□□ -0.79
SKA3-204ENST00000462482 CRIP1P50238 77 aa10.12□□□□□ -0.79
SKA3-204ENST00000462482 LINC01620Q4KN68 170 aa10.12□□□□□ -0.79
SKA3-204ENST00000462482 SCXQ7RTU7 201 aa10.12□□□□□ -0.79
SKA3-204ENST00000462482 COX8CQ7Z4L0 72 aa10.12□□□□□ -0.79
SKA3-204ENST00000462482 C1orf43Q9BWL3 253 aa10.12□□□□□ -0.79
SKA3-204ENST00000462482 TRBV7-3A0A075B6L6 115 aa10.11□□□□□ -0.79
SKA3-204ENST00000462482 MAP1LC3B2A6NCE7 125 aa10.11□□□□□ -0.79
SKA3-204ENST00000462482 KRTAP29-1A8MX34 341 aaPredicted RBP10.11□□□□□ -0.79
SKA3-204ENST00000462482 LINC01559Q495D7 138 aa10.11□□□□□ -0.79
SKA3-204ENST00000462482 Q5BKY6 102 aa10.11□□□□□ -0.79
SKA3-204ENST00000462482 CST9LP1Q5W188 147 aa10.11□□□□□ -0.79
SKA3-204ENST00000462482 CHAC1Q9BUX1 264 aa10.11□□□□□ -0.79
SKA3-204ENST00000462482 MAP1LC3BQ9GZQ8 125 aa10.11□□□□□ -0.79
SKA3-204ENST00000462482 AKR1C3P42330 323 aa10.1□□□□□ -0.79
SKA3-204ENST00000462482 PKIAP61925 76 aa10.1□□□□□ -0.79
SKA3-204ENST00000462482 ZNF674Q2M3X9 581 aa10.1□□□□□ -0.79
SKA3-204ENST00000462482 TRBV6-1A0A0K0K1D8 114 aa10.09□□□□□ -0.79
SKA3-204ENST00000462482 FHITP49789 147 aa10.09□□□□□ -0.79
SKA3-204ENST00000462482 UBE2D3P61077 147 aa10.09□□□□□ -0.79
SKA3-204ENST00000462482 UBE2D2P62837 147 aa10.09□□□□□ -0.79
SKA3-204ENST00000462482 ZNF56Q15929 161 aa10.09□□□□□ -0.79
SKA3-204ENST00000462482 LTAP01374 205 aa10.08□□□□□ -0.8
SKA3-204ENST00000462482 RAB4BP61018 213 aa10.08□□□□□ -0.8
SKA3-204ENST00000462482 TRBV6-8A0A0A6YYG3 113 aa10.07□□□□□ -0.8
SKA3-204ENST00000462482 S100A9P06702 114 aaKnown RBP10.07□□□□□ -0.8
SKA3-204ENST00000462482 ATRAIDQ6UW56 229 aa10.07□□□□□ -0.8
SKA3-204ENST00000462482 C15orf54Q8N8G6 183 aa10.07□□□□□ -0.8
SKA3-204ENST00000462482 OR10G8Q8NGN5 311 aa10.07□□□□□ -0.8
SKA3-204ENST00000462482 DNAJC30Q96LL9 226 aa10.07□□□□□ -0.8
SKA3-204ENST00000462482 CHCHD5Q9BSY4 110 aa10.07□□□□□ -0.8
SKA3-204ENST00000462482 ZNF471Q9BX82 626 aaPredicted RBP10.07□□□□□ -0.8
SKA3-204ENST00000462482 BATF3Q9NR55 127 aa10.07□□□□□ -0.8
SKA3-204ENST00000462482 ANGP03950 147 aaKnown RBP10.06□□□□□ -0.8
SKA3-204ENST00000462482 TMEM97Q5BJF2 176 aa10.06□□□□□ -0.8
SKA3-204ENST00000462482 SERTAD4-AS1Q5TG53 156 aa10.06□□□□□ -0.8
SKA3-204ENST00000462482 CIRBP-AS1Q8TBR5 109 aa10.06□□□□□ -0.8
SKA3-204ENST00000462482 F5H697 171 aa10.05□□□□□ -0.8
SKA3-204ENST00000462482 PFDN1O60925 122 aa10.05□□□□□ -0.8
SKA3-204ENST00000462482 IGLV2-8P01709 118 aa10.05□□□□□ -0.8
SKA3-204ENST00000462482 SPANXN1Q5VSR9 72 aa10.05□□□□□ -0.8
SKA3-204ENST00000462482 DNAH8Q96JB1 4490 aa10.04□□□□□ -0.8
SKA3-204ENST00000462482 ARPC5O15511 151 aa10.04□□□□□ -0.8
SKA3-204ENST00000462482 PAGE4O60829 102 aa10.04□□□□□ -0.8
SKA3-204ENST00000462482 OXTP01178 125 aa10.04□□□□□ -0.8
SKA3-204ENST00000462482 HLA-DQA1P01909 254 aa10.04□□□□□ -0.8
SKA3-204ENST00000462482 CXCL1P09341 107 aa10.04□□□□□ -0.8
SKA3-204ENST00000462482 SMIM17P0DL12 118 aa10.04□□□□□ -0.8
SKA3-204ENST00000462482 MIAQ16674 131 aa10.03□□□□□ -0.8
SKA3-204ENST00000462482 ENHOQ6UWT2 76 aa10.03□□□□□ -0.8
SKA3-204ENST00000462482 BAGE2Q86Y30 109 aa10.03□□□□□ -0.8
SKA3-204ENST00000462482 NEXN-AS1Q8NBZ9 246 aa10.03□□□□□ -0.8
SKA3-204ENST00000462482 USP17L23D6RBM5 183 aa10.02□□□□□ -0.81
SKA3-204ENST00000462482 MPV17L2Q567V2 206 aa10.02□□□□□ -0.81
SKA3-204ENST00000462482 OR10AG1Q8NH19 301 aa10.02□□□□□ -0.81
SKA3-204ENST00000462482 SFT2D1Q8WV19 159 aa10.02□□□□□ -0.81
SKA3-204ENST00000462482 UMAD1C9J7I0 102 aa10.01□□□□□ -0.81
SKA3-204ENST00000462482 RPL19P84098 196 aaKnown RBP10.01□□□□□ -0.81
SKA3-204ENST00000462482 PRR27Q6MZM9 219 aa10.01□□□□□ -0.81
SKA3-204ENST00000462482 FAM213BQ8TBF2 198 aa10.01□□□□□ -0.81
SKA3-204ENST00000462482 CYTL1Q9NRR1 136 aa10.01□□□□□ -0.81
SKA3-204ENST00000462482 TRBV25-1A0A075B6N4 114 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 376.3 ms