RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ZNF493Q6ZR52 646 aa8.89□□□□□ -0.99
NPHP4-204ENST00000460696 ADGRG4Q8IZF6 3080 aa8.89□□□□□ -0.99
NPHP4-204ENST00000460696 CDKN1BP46527 198 aa8.89□□□□□ -0.99
NPHP4-204ENST00000460696 C9orf47Q6ZRZ4 202 aa8.89□□□□□ -0.99
NPHP4-204ENST00000460696 LENEPQ9Y5L5 61 aa8.89□□□□□ -0.99
NPHP4-204ENST00000460696 TRAV2A0A0B4J234 112 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 F8VRH5 84 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 LY6G6DO95868 133 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 IGLC6P0CF74 106 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 IGHV1OR15-1A0A075B7D0 117 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 H3BUA1 57 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 K7EMI3 77 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 K7ERJ3 54 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 CIDEAO60543 219 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 SPATA12Q7Z6I5 190 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 DEFB125Q8N687 156 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 PHLDA1Q8WV24 401 aaPredicted RBP8.88□□□□□ -0.99
NPHP4-204ENST00000460696 URB1-AS1Q96HZ7 61 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 A0A0U1RRA0 63 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 UBE2L6O14933 153 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 IGHV3-53P01767 116 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 RIPPLY3P57055 190 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 XCL2Q9UBD3 114 aa8.88□□□□□ -0.99
NPHP4-204ENST00000460696 HOXD3P31249 432 aaPredicted RBP8.87□□□□□ -0.99
NPHP4-204ENST00000460696 TRGV2A0A075B6R0 118 aa8.87□□□□□ -0.99
NPHP4-204ENST00000460696 MTURNQ8N3F0 131 aa8.87□□□□□ -0.99
NPHP4-204ENST00000460696 Q8N976 141 aa8.87□□□□□ -0.99
NPHP4-204ENST00000460696 IGHV3-16A0A0C4DH30 117 aa8.87□□□□□ -0.99
NPHP4-204ENST00000460696 LAMA5O15230 3695 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 F8W735 103 aaPredicted RBP8.86□□□□□ -0.99
NPHP4-204ENST00000460696 PRADC1Q9BSG0 188 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 CST9LQ9H4G1 147 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 H3BRM9 83 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 MRPS12O15235 138 aaKnown RBP8.86□□□□□ -0.99
NPHP4-204ENST00000460696 GAS8-AS1O95177 125 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 C19orf54Q5BKX5 351 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 OR5A1Q8NGJ0 315 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 JPT2Q9H910 190 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 A0A087WX48 190 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 C9orf118A6NHY6 69 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 PRSS29PA6NIE9 313 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 MEIG1Q5JSS6 88 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 Q6ZQT7 251 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 VPREB3Q9UKI3 123 aa8.86□□□□□ -0.99
NPHP4-204ENST00000460696 TRGV1A0A0A0MS02 117 aa8.85□□□□□ -0.99
NPHP4-204ENST00000460696 A6NDX4 124 aa8.85□□□□□ -0.99
NPHP4-204ENST00000460696 Q6ZS46 218 aa8.85□□□□□ -0.99
NPHP4-204ENST00000460696 C20orf173Q96LM9 149 aa8.85□□□□□ -0.99
NPHP4-204ENST00000460696 C20orf78Q9BR46 151 aa8.85□□□□□ -0.99
NPHP4-204ENST00000460696 TRBV25-1A0A075B6N4 114 aa8.85□□□□□ -0.99
NPHP4-204ENST00000460696 HLA-DRB4P13762 266 aa8.85□□□□□ -0.99
NPHP4-204ENST00000460696 C10orf99Q6UWK7 81 aa8.85□□□□□ -0.99
NPHP4-204ENST00000460696 SPXQ9BT56 116 aa8.85□□□□□ -0.99
NPHP4-204ENST00000460696 HLA-DRB4X5D2U9 266 aa8.85□□□□□ -0.99
NPHP4-204ENST00000460696 SAP30O75446 220 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 SLURP1P55000 103 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 C11orf21Q9P2W6 132 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 TRAV8-2A0A0B4J237 113 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 TAX1BP3O14907 124 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 ELANEP08246 267 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 NPC2P61916 151 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 ZNF415Q09FC8 603 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 PGPEP1Q9NXJ5 209 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 COX6CP09669 75 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 ODF1Q14990 250 aa8.84□□□□□ -0.99
NPHP4-204ENST00000460696 TRPT1Q86TN4 253 aaKnown RBP8.84□□□□□ -0.99
NPHP4-204ENST00000460696 PMVKQ15126 192 aa8.83□□□□□ -1
NPHP4-204ENST00000460696 LINC01549A6NIU2 74 aa8.83□□□□□ -1
NPHP4-204ENST00000460696 J3QLI3 93 aa8.83□□□□□ -1
NPHP4-204ENST00000460696 TOMM7Q9P0U1 55 aa8.83□□□□□ -1
NPHP4-204ENST00000460696 IGHV4OR15-8A0A075B7B6 117 aa8.83□□□□□ -1
NPHP4-204ENST00000460696 A0A087WW49 117 aa8.83□□□□□ -1
NPHP4-204ENST00000460696 IGHV3-38A0A0C4DH36 116 aa8.83□□□□□ -1
NPHP4-204ENST00000460696 LINC01619G3V211 115 aa8.83□□□□□ -1
NPHP4-204ENST00000460696 RPL35AP18077 110 aaKnown RBP8.83□□□□□ -1
NPHP4-204ENST00000460696 CIRBPQ14011 172 aaKnown RBP8.83□□□□□ -1
NPHP4-204ENST00000460696 OCIAD2Q56VL3 154 aa8.83□□□□□ -1
NPHP4-204ENST00000460696 RPL13AP40429 203 aaKnown RBP8.82□□□□□ -1
NPHP4-204ENST00000460696 MYMXA0A1B0GTQ4 84 aa8.82□□□□□ -1
NPHP4-204ENST00000460696 CRXO43186 299 aaPredicted RBP8.82□□□□□ -1
NPHP4-204ENST00000460696 LGALS1P09382 135 aaKnown RBP8.82□□□□□ -1
NPHP4-204ENST00000460696 GAGE13Q4V321 117 aa8.82□□□□□ -1
NPHP4-204ENST00000460696 RNASE13Q5GAN3 156 aaKnown RBP8.82□□□□□ -1
NPHP4-204ENST00000460696 CLPSL1A2RUU4 121 aa8.82□□□□□ -1
NPHP4-204ENST00000460696 RPL39P62891 51 aaKnown RBP8.82□□□□□ -1
NPHP4-204ENST00000460696 BOD1L2Q8IYS8 172 aa8.82□□□□□ -1
NPHP4-204ENST00000460696 FXYD2P54710 66 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 SUMO4Q6EEV6 95 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 AMTNQ6UX39 209 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 RNF185Q96GF1 192 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 Q8N1Y9 231 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 ATP6V0BQ99437 205 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 K7EP13 123 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 INSP01308 110 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 APRG1Q8IVJ8 170 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 GATD1Q8NB37 220 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 MDFICQ9P1T7 246 aa8.81□□□□□ -1
NPHP4-204ENST00000460696 TMEM262E9PQX1 116 aa8.8□□□□□ -1
NPHP4-204ENST00000460696 SIVA1O15304 175 aa8.8□□□□□ -1
NPHP4-204ENST00000460696 PRR9Q5T870 116 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms