RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 MUC4Q99102 2169 aa13.72□□□□□ -0.21
SEMA3B-209ENST00000456560 LGALS9O00182 355 aa13.71□□□□□ -0.21
SEMA3B-209ENST00000456560 HLA-DRB4P13762 266 aa13.71□□□□□ -0.21
SEMA3B-209ENST00000456560 HLA-DRB4X5D2U9 266 aa13.71□□□□□ -0.21
SEMA3B-209ENST00000456560 A0A0J9YX75 114 aa13.71□□□□□ -0.22
SEMA3B-209ENST00000456560 ZNF688P0C7X2 276 aa13.71□□□□□ -0.22
SEMA3B-209ENST00000456560 WFDC12Q8WWY7 111 aa13.71□□□□□ -0.22
SEMA3B-209ENST00000456560 TOMM6Q96B49 74 aa13.71□□□□□ -0.22
SEMA3B-209ENST00000456560 TEX48A0A1B0GUV7 120 aa13.7□□□□□ -0.22
SEMA3B-209ENST00000456560 IGHV4OR15-8A0A075B7B6 117 aa13.7□□□□□ -0.22
SEMA3B-209ENST00000456560 A0A087WW49 117 aa13.7□□□□□ -0.22
SEMA3B-209ENST00000456560 TRAV12-1A0A0B4J245 112 aa13.7□□□□□ -0.22
SEMA3B-209ENST00000456560 TRAV12-3A0A0B4J271 114 aa13.7□□□□□ -0.22
SEMA3B-209ENST00000456560 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.7□□□□□ -0.22
SEMA3B-209ENST00000456560 PPP1R17O96001 155 aa13.7□□□□□ -0.22
SEMA3B-209ENST00000456560 SYNJ2BPP57105 145 aa13.7□□□□□ -0.22
SEMA3B-209ENST00000456560 MAPKAPK5-AS1Q8N8E1 139 aa13.7□□□□□ -0.22
SEMA3B-209ENST00000456560 ITPR2Q14571 2701 aa13.69□□□□□ -0.22
SEMA3B-209ENST00000456560 RNF152Q8N8N0 203 aa13.69□□□□□ -0.22
SEMA3B-209ENST00000456560 UBE2E2Q96LR5 201 aa13.69□□□□□ -0.22
SEMA3B-209ENST00000456560 CR1P17927 2039 aa13.69□□□□□ -0.22
SEMA3B-209ENST00000456560 SNRPD3P62318 126 aaKnown RBP13.68□□□□□ -0.22
SEMA3B-209ENST00000456560 UNC79Q9P2D8 2635 aa13.68□□□□□ -0.22
SEMA3B-209ENST00000456560 IGLL5B9A064 214 aa13.67□□□□□ -0.22
SEMA3B-209ENST00000456560 E9PLD3 99 aa13.67□□□□□ -0.22
SEMA3B-209ENST00000456560 SCGB3A1Q96QR1 104 aa13.67□□□□□ -0.22
SEMA3B-209ENST00000456560 BEX4Q9NWD9 120 aaPredicted RBP13.67□□□□□ -0.22
SEMA3B-209ENST00000456560 HOXA3O43365 443 aaPredicted RBP13.67□□□□□ -0.22
SEMA3B-209ENST00000456560 CD7P09564 240 aa13.67□□□□□ -0.22
SEMA3B-209ENST00000456560 HOXD3P31249 432 aaPredicted RBP13.67□□□□□ -0.22
SEMA3B-209ENST00000456560 RPL32P62910 135 aaKnown RBP13.67□□□□□ -0.22
SEMA3B-209ENST00000456560 SVIPQ8NHG7 77 aa13.67□□□□□ -0.22
SEMA3B-209ENST00000456560 JPT2Q9H910 190 aa13.67□□□□□ -0.22
SEMA3B-209ENST00000456560 TAL2Q16559 108 aa13.66□□□□□ -0.22
SEMA3B-209ENST00000456560 NEXN-AS1Q8NBZ9 246 aa13.66□□□□□ -0.22
SEMA3B-209ENST00000456560 C9orf85Q96MD7 179 aa13.66□□□□□ -0.22
SEMA3B-209ENST00000456560 CCDC168Q8NDH2 2452 aa13.66□□□□□ -0.22
SEMA3B-209ENST00000456560 IGHV3-16A0A0C4DH30 117 aa13.66□□□□□ -0.22
SEMA3B-209ENST00000456560 H7C1H1 209 aa13.66□□□□□ -0.22
SEMA3B-209ENST00000456560 PLNP26678 52 aa13.66□□□□□ -0.22
SEMA3B-209ENST00000456560 DEFB113Q30KQ7 82 aa13.66□□□□□ -0.22
SEMA3B-209ENST00000456560 ZNF479Q96JC4 524 aa13.66□□□□□ -0.22
SEMA3B-209ENST00000456560 HIST1H4GQ99525 98 aa13.66□□□□□ -0.22
SEMA3B-209ENST00000456560 F8VRH5 84 aa13.65□□□□□ -0.22
SEMA3B-209ENST00000456560 C12orf74Q32Q52 190 aa13.65□□□□□ -0.22
SEMA3B-209ENST00000456560 C2orf66Q6UXQ4 117 aa13.65□□□□□ -0.22
SEMA3B-209ENST00000456560 FOXI2Q6ZQN5 318 aa13.65□□□□□ -0.22
SEMA3B-209ENST00000456560 SUMO4Q6EEV6 95 aa13.64□□□□□ -0.23
SEMA3B-209ENST00000456560 LRRC75A-AS1Q8N1F1 130 aa13.64□□□□□ -0.23
SEMA3B-209ENST00000456560 DUX5Q96PT3 197 aa13.64□□□□□ -0.23
SEMA3B-209ENST00000456560 ZANQ9Y493 2812 aa13.64□□□□□ -0.23
SEMA3B-209ENST00000456560 ZNF469Q96JG9 3925 aaPredicted RBP13.64□□□□□ -0.23
SEMA3B-209ENST00000456560 TRAV12-2A0A075B6T6 113 aa13.63□□□□□ -0.23
SEMA3B-209ENST00000456560 F8W1H4 67 aa13.63□□□□□ -0.23
SEMA3B-209ENST00000456560 IGKV3-20P01619 116 aa13.63□□□□□ -0.23
SEMA3B-209ENST00000456560 POLR2KP53803 58 aaKnown RBP13.63□□□□□ -0.23
SEMA3B-209ENST00000456560 WFDC2Q14508 124 aa13.63□□□□□ -0.23
SEMA3B-209ENST00000456560 Q5PR19 223 aa13.63□□□□□ -0.23
SEMA3B-209ENST00000456560 Q8N2B8 174 aa13.63□□□□□ -0.23
SEMA3B-209ENST00000456560 CHTOPQ9Y3Y2 248 aaKnown RBP13.63□□□□□ -0.23
SEMA3B-209ENST00000456560 DUSP14O95147 198 aaKnown RBP13.63□□□□□ -0.23
SEMA3B-209ENST00000456560 MDFICQ9P1T7 246 aa13.63□□□□□ -0.23
SEMA3B-209ENST00000456560 PRRC2AP48634 2157 aaKnown RBP13.62□□□□□ -0.23
SEMA3B-209ENST00000456560 PDZD2O15018 2839 aa13.62□□□□□ -0.23
SEMA3B-209ENST00000456560 BAALCQ8WXS3 180 aa13.62□□□□□ -0.23
SEMA3B-209ENST00000456560 A0A087WWL8 130 aa13.62□□□□□ -0.23
SEMA3B-209ENST00000456560 AMTNQ6UX39 209 aa13.62□□□□□ -0.23
SEMA3B-209ENST00000456560 SPANXB1Q9NS25 103 aaPredicted RBP13.62□□□□□ -0.23
SEMA3B-209ENST00000456560 IGHV1OR15-1A0A075B7D0 117 aa13.61□□□□□ -0.23
SEMA3B-209ENST00000456560 H3BMG7 143 aa13.61□□□□□ -0.23
SEMA3B-209ENST00000456560 SPINK13Q1W4C9 94 aa13.61□□□□□ -0.23
SEMA3B-209ENST00000456560 Q8N1Y9 231 aa13.61□□□□□ -0.23
SEMA3B-209ENST00000456560 TCTEX1D4Q5JR98 221 aa13.6□□□□□ -0.23
SEMA3B-209ENST00000456560 C18orf65Q6ZTR6 163 aa13.6□□□□□ -0.23
SEMA3B-209ENST00000456560 TRBV6-5A0A0K0K1A5 114 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 OR11H12B2RN74 326 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 OR11H1Q8NG94 326 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 OR11H2Q8NH07 326 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 SIGMAR1Q99720 223 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 GTSF1LQ9H1H1 148 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 TSSC4Q9Y5U2 329 aaPredicted RBP13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 TRBV7-3A0A075B6L6 115 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 MYMXA0A1B0GTQ4 84 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 PRSS29PA6NIE9 313 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 J3QR89 54 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 VCYO14598 125 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 AZU1P20160 251 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 RRN3P1Q2M238 152 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 ZFP2Q6ZN57 461 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 Q96MF0 132 aa13.59□□□□□ -0.23
SEMA3B-209ENST00000456560 F5H697 171 aa13.58□□□□□ -0.24
SEMA3B-209ENST00000456560 CRYGDP07320 174 aa13.58□□□□□ -0.24
SEMA3B-209ENST00000456560 SLURP1P55000 103 aa13.58□□□□□ -0.24
SEMA3B-209ENST00000456560 KRTAP1-3Q8IUG1 177 aa13.58□□□□□ -0.24
SEMA3B-209ENST00000456560 SYT8Q8NBV8 401 aa13.58□□□□□ -0.24
SEMA3B-209ENST00000456560 CYSLTR1Q9Y271 337 aa13.58□□□□□ -0.24
SEMA3B-209ENST00000456560 AGRNO00468 2067 aa13.58□□□□□ -0.24
SEMA3B-209ENST00000456560 CD300EQ496F6 205 aaPredicted RBP13.58□□□□□ -0.24
SEMA3B-209ENST00000456560 TSHBP01222 138 aa13.57□□□□□ -0.24
SEMA3B-209ENST00000456560 SH2D6Q7Z4S9 175 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms