RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 PRM2P04554 102 aa12.14□□□□□ -0.47
PRPF40A-204ENST00000450303 SPART-AS1P0CW21 52 aa12.14□□□□□ -0.47
PRPF40A-204ENST00000450303 HBBP68871 147 aa12.14□□□□□ -0.47
PRPF40A-204ENST00000450303 TDRG1Q3Y452 100 aa12.14□□□□□ -0.47
PRPF40A-204ENST00000450303 LINC01559Q495D7 138 aa12.14□□□□□ -0.47
PRPF40A-204ENST00000450303 OR10J3Q5JRS4 329 aa12.14□□□□□ -0.47
PRPF40A-204ENST00000450303 FAM222AQ5U5X8 452 aa12.13□□□□□ -0.47
PRPF40A-204ENST00000450303 Q6ZQT7 251 aa12.13□□□□□ -0.47
PRPF40A-204ENST00000450303 ZNF493Q6ZR52 646 aa12.13□□□□□ -0.47
PRPF40A-204ENST00000450303 VPS13DQ5THJ4 4388 aa12.13□□□□□ -0.47
PRPF40A-204ENST00000450303 A0A1B0GW15 77 aa12.12□□□□□ -0.47
PRPF40A-204ENST00000450303 S100A4P26447 101 aaKnown RBP12.12□□□□□ -0.47
PRPF40A-204ENST00000450303 RIGQ13278 110 aa12.12□□□□□ -0.47
PRPF40A-204ENST00000450303 C16orf74Q96GX8 76 aa12.12□□□□□ -0.47
PRPF40A-204ENST00000450303 C11orf21Q9P2W6 132 aa12.12□□□□□ -0.47
PRPF40A-204ENST00000450303 DKK2Q9UBU2 259 aa12.12□□□□□ -0.47
PRPF40A-204ENST00000450303 IGKV3D-20A0A0C4DH25 116 aa12.11□□□□□ -0.47
PRPF40A-204ENST00000450303 ASIPP42127 132 aa12.11□□□□□ -0.47
PRPF40A-204ENST00000450303 ZNF415Q09FC8 603 aa12.11□□□□□ -0.47
PRPF40A-204ENST00000450303 PYY3Q5JQD4 70 aa12.11□□□□□ -0.47
PRPF40A-204ENST00000450303 TMEM263Q8WUH6 116 aaKnown RBP12.11□□□□□ -0.47
PRPF40A-204ENST00000450303 PGLYRP4Q96LB8 373 aa12.11□□□□□ -0.47
PRPF40A-204ENST00000450303 TMSB15BA0A087X1C1 80 aa12.1□□□□□ -0.47
PRPF40A-204ENST00000450303 GRIFINA4D1Z8 144 aa12.1□□□□□ -0.47
PRPF40A-204ENST00000450303 GNRH2O43555 120 aa12.1□□□□□ -0.47
PRPF40A-204ENST00000450303 ESDP10768 282 aa12.1□□□□□ -0.47
PRPF40A-204ENST00000450303 JOSD1Q15040 202 aaPredicted RBP12.1□□□□□ -0.47
PRPF40A-204ENST00000450303 A0A1B0GXF2 115 aa12.09□□□□□ -0.47
PRPF40A-204ENST00000450303 HTN3P15516 51 aa12.09□□□□□ -0.47
PRPF40A-204ENST00000450303 SRIP30626 198 aa12.09□□□□□ -0.47
PRPF40A-204ENST00000450303 CAMPP49913 170 aa12.09□□□□□ -0.47
PRPF40A-204ENST00000450303 SAMD10Q9BYL1 202 aa12.09□□□□□ -0.47
PRPF40A-204ENST00000450303 TP53TG3Q9ULZ0 132 aa12.09□□□□□ -0.47
PRPF40A-204ENST00000450303 A0A1B0GUT8 65 aa12.08□□□□□ -0.48
PRPF40A-204ENST00000450303 NDUFAF3Q9BU61 184 aa12.08□□□□□ -0.48
PRPF40A-204ENST00000450303 IGHV3-16A0A0C4DH30 117 aa12.07□□□□□ -0.48
PRPF40A-204ENST00000450303 MED14OSP0DP75 135 aa12.07□□□□□ -0.48
PRPF40A-204ENST00000450303 AZU1P20160 251 aa12.07□□□□□ -0.48
PRPF40A-204ENST00000450303 FOXA3P55318 350 aaPredicted RBP12.07□□□□□ -0.48
PRPF40A-204ENST00000450303 IQCJQ1A5X6 159 aa12.07□□□□□ -0.48
PRPF40A-204ENST00000450303 RNASE8Q8TDE3 154 aaKnown RBP12.07□□□□□ -0.48
PRPF40A-204ENST00000450303 SPXQ9BT56 116 aa12.07□□□□□ -0.48
PRPF40A-204ENST00000450303 DNAH10Q8IVF4 4471 aa12.07□□□□□ -0.48
PRPF40A-204ENST00000450303 SERF1AO75920 110 aa12.06□□□□□ -0.48
PRPF40A-204ENST00000450303 DAD1P61803 113 aa12.06□□□□□ -0.48
PRPF40A-204ENST00000450303 KIAA1644Q3SXP7 199 aa12.06□□□□□ -0.48
PRPF40A-204ENST00000450303 GTSF1Q8WW33 167 aa12.06□□□□□ -0.48
PRPF40A-204ENST00000450303 TIMM8BQ9Y5J9 83 aaPredicted RBP12.06□□□□□ -0.48
PRPF40A-204ENST00000450303 TEX48A0A1B0GUV7 120 aa12.05□□□□□ -0.48
PRPF40A-204ENST00000450303 ARMS2P0C7Q2 107 aa12.05□□□□□ -0.48
PRPF40A-204ENST00000450303 FER1L6-AS1Q8NA97 138 aa12.05□□□□□ -0.48
PRPF40A-204ENST00000450303 GSN-AS1Q9NRJ2 163 aa12.05□□□□□ -0.48
PRPF40A-204ENST00000450303 MDFICQ9P1T7 246 aa12.05□□□□□ -0.48
PRPF40A-204ENST00000450303 F2Z2F3 143 aa12.04□□□□□ -0.48
PRPF40A-204ENST00000450303 H3BVH4 76 aa12.04□□□□□ -0.48
PRPF40A-204ENST00000450303 GZMBP10144 247 aa12.04□□□□□ -0.48
PRPF40A-204ENST00000450303 SLAQ13239 276 aa12.04□□□□□ -0.48
PRPF40A-204ENST00000450303 C11orf72Q8NBR9 251 aa12.04□□□□□ -0.48
PRPF40A-204ENST00000450303 PHLDA3Q9Y5J5 127 aa12.04□□□□□ -0.48
PRPF40A-204ENST00000450303 FRAS1Q86XX4 4008 aa12.03□□□□□ -0.48
PRPF40A-204ENST00000450303 TSTD3H0UI37 97 aa12.03□□□□□ -0.48
PRPF40A-204ENST00000450303 OR5AL1P0C617 328 aa12.03□□□□□ -0.48
PRPF40A-204ENST00000450303 RNASE3P12724 160 aaKnown RBP12.03□□□□□ -0.48
PRPF40A-204ENST00000450303 DAZ2Q13117 558 aaKnown RBP12.03□□□□□ -0.48
PRPF40A-204ENST00000450303 SYT8Q8NBV8 401 aa12.03□□□□□ -0.48
PRPF40A-204ENST00000450303 C9orf85Q96MD7 179 aa12.03□□□□□ -0.48
PRPF40A-204ENST00000450303 TPPP3Q9BW30 176 aa12.03□□□□□ -0.48
PRPF40A-204ENST00000450303 DNAH6Q9C0G6 4158 aa12.03□□□□□ -0.48
PRPF40A-204ENST00000450303 LYRM9A8MSI8 78 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 M0R2P5 195 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 SNAI2O43623 268 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 SCGB1D1O95968 90 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 IGLC6P0CF74 106 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 P0DMU3 169 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 FAM231AP0DMU4 169 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 FAM231CP0DMU5 169 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 DEFB130BP0DP73 79 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 DEFB130AP0DP74 79 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 PKIAP61925 76 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 CACNG7P62955 275 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 POM121L12Q8N7R1 296 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 GATD1Q8NB37 220 aa12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 ALKBH7Q9BT30 221 aaPredicted RBP12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 SSBP4Q9BWG4 385 aaPredicted RBP12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 NOP10Q9NPE3 64 aaKnown RBP12.02□□□□□ -0.49
PRPF40A-204ENST00000450303 PLAC8L1A1L4L8 177 aa12.01□□□□□ -0.49
PRPF40A-204ENST00000450303 AMTP48728 403 aa12.01□□□□□ -0.49
PRPF40A-204ENST00000450303 LGALS9BQ3B8N2 356 aa12.01□□□□□ -0.49
PRPF40A-204ENST00000450303 SPANXN1Q5VSR9 72 aa12.01□□□□□ -0.49
PRPF40A-204ENST00000450303 DMRTA1Q5VZB9 504 aa12.01□□□□□ -0.49
PRPF40A-204ENST00000450303 ZNF575Q86XF7 245 aa12.01□□□□□ -0.49
PRPF40A-204ENST00000450303 C18orf32Q8TCD1 76 aa12.01□□□□□ -0.49
PRPF40A-204ENST00000450303 PTH2Q96A98 100 aa12.01□□□□□ -0.49
PRPF40A-204ENST00000450303 M0R2N4 97 aa12□□□□□ -0.49
PRPF40A-204ENST00000450303 HSBP1O75506 76 aa12□□□□□ -0.49
PRPF40A-204ENST00000450303 LYZL1Q6UWQ5 148 aa12□□□□□ -0.49
PRPF40A-204ENST00000450303 SCRT2Q9NQ03 307 aa12□□□□□ -0.49
PRPF40A-204ENST00000450303 TRGV1A0A0A0MS02 117 aa11.99□□□□□ -0.49
PRPF40A-204ENST00000450303 NUPR1O60356 82 aa11.99□□□□□ -0.49
PRPF40A-204ENST00000450303 RAB4AP20338 218 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms