RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 S100A9P06702 114 aaKnown RBP4.74□□□□□ -1.65
VPS41-208ENST00000448833 IGHV3-30-3P0DP02 117 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 IGHV3-30-5P0DP03 117 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 FHITP49789 147 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 KRTAP10-1P60331 282 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 UBE2G1P62253 170 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 FAM162BQ5T6X4 162 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 Q5VSD8 79 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 COX8CQ7Z4L0 72 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 OR11H4Q8NGC9 324 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 CHCHD7Q9BUK0 85 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 PARLQ9H300 379 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 Q9HAA7 133 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 C11orf21Q9P2W6 132 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 PHLDA3Q9Y5J5 127 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 FXYD6-FXYD2A0A087WZ82 144 aa4.73□□□□□ -1.65
VPS41-208ENST00000448833 IGKV3D-20A0A0C4DH25 116 aa4.73□□□□□ -1.65
VPS41-208ENST00000448833 TRBV10-1A0A0K0K1A3 114 aa4.73□□□□□ -1.65
VPS41-208ENST00000448833 TRBV6-1A0A0K0K1D8 114 aa4.73□□□□□ -1.65
VPS41-208ENST00000448833 FAM74A7A6NL05 159 aa4.73□□□□□ -1.65
VPS41-208ENST00000448833 TPT1P13693 172 aaKnown RBP4.73□□□□□ -1.65
VPS41-208ENST00000448833 PKIAP61925 76 aa4.73□□□□□ -1.65
VPS41-208ENST00000448833 RPL7L1Q6DKI1 246 aaKnown RBP4.73□□□□□ -1.65
VPS41-208ENST00000448833 DPPA3Q6W0C5 159 aa4.73□□□□□ -1.65
VPS41-208ENST00000448833 Q8N976 141 aa4.73□□□□□ -1.65
VPS41-208ENST00000448833 OR2T35Q8NGX2 323 aa4.73□□□□□ -1.65
VPS41-208ENST00000448833 LINC00479Q96M42 142 aa4.73□□□□□ -1.65
VPS41-208ENST00000448833 SRRM2Q9UQ35 2752 aaKnown RBP4.73□□□□□ -1.65
VPS41-208ENST00000448833 A0A087WX48 190 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 TRAV34A0A0B4J273 112 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 GAGE12JA6NER3 117 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 UMAD1C9J7I0 102 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 KRBOX1C9JBD0 128 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 PLA2G1BP04054 148 aaKnown RBP4.72□□□□□ -1.65
VPS41-208ENST00000448833 ARMS2P0C7Q2 107 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 UBE2G2P60604 165 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 RPL36AP83881 106 aaKnown RBP4.72□□□□□ -1.65
VPS41-208ENST00000448833 Q0VG73 95 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 GAGE1Q13065 139 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 GAGE4Q13068 117 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 GAGE5Q13069 117 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 GAGE13Q4V321 117 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 Q6ZSN1 163 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 Q86TA4 180 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 ZFP82Q8N141 532 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 RPL36ALQ969Q0 106 aaKnown RBP4.72□□□□□ -1.65
VPS41-208ENST00000448833 SFRP2Q96HF1 295 aa4.72□□□□□ -1.65
VPS41-208ENST00000448833 TRBV7-3A0A075B6L6 115 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 MAP1LC3B2A6NCE7 125 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 RNF222A6NCQ9 220 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 H3BVH4 76 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 FUSP35637 526 aaKnown RBP eCLIP4.71□□□□□ -1.66
VPS41-208ENST00000448833 EIF5AP63241 154 aaKnown RBP4.71□□□□□ -1.66
VPS41-208ENST00000448833 ZNF726P1Q15940 193 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 ZNF674Q2M3X9 581 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 C14orf177Q52M58 125 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 TMEM97Q5BJF2 176 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 FAM74A4Q5TZK3 123 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 CST9LP1Q5W188 147 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 ZC2HC1AQ96GY0 325 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 MAP1LC3BQ9GZQ8 125 aa4.71□□□□□ -1.66
VPS41-208ENST00000448833 M0R036 132 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 M0R381 172 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 ARPC5O15511 151 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 SH2D1AO60880 128 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 PFDN1O60925 122 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 LTAP01374 205 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 SMR3BP02814 79 aaPredicted RBP4.7□□□□□ -1.66
VPS41-208ENST00000448833 CXCL1P09341 107 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 LINC00694P0DN24 101 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 RAB4BP61018 213 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 RGS21Q2M5E4 152 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 Q5BKY6 102 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 UFSP1Q6NVU6 142 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 DAZ4Q86SG3 579 aaKnown RBP4.7□□□□□ -1.66
VPS41-208ENST00000448833 KRTAP4-9Q9BYQ8 210 aa4.7□□□□□ -1.66
VPS41-208ENST00000448833 DAZ3Q9NR90 486 aaKnown RBP4.7□□□□□ -1.66
VPS41-208ENST00000448833 IGKV2D-24A0A075B6R9 120 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 A0A0D9SG52 128 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 GRIFINA4D1Z8 144 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 RBFOX3A6NFN3 312 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 TEX46H3BTG2 121 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 AKR1C3P42330 323 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 CRIP1P50238 77 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 ZNF345Q14585 488 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 NIT1Q86X76 327 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 C14orf178Q8N769 122 aaPredicted RBP4.69□□□□□ -1.66
VPS41-208ENST00000448833 SFT2D1Q8WV19 159 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 ZNF471Q9BX82 626 aaPredicted RBP4.69□□□□□ -1.66
VPS41-208ENST00000448833 SAMD10Q9BYL1 202 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 KRTAP4-2Q9BYR5 136 aa4.69□□□□□ -1.66
VPS41-208ENST00000448833 A0A087WWL8 130 aa4.68□□□□□ -1.66
VPS41-208ENST00000448833 KANTRA0A1W2PQU2 76 aa4.68□□□□□ -1.66
VPS41-208ENST00000448833 HMSDA8MTL9 139 aa4.68□□□□□ -1.66
VPS41-208ENST00000448833 TMEM262E9PQX1 116 aa4.68□□□□□ -1.66
VPS41-208ENST00000448833 PAGE4O60829 102 aa4.68□□□□□ -1.66
VPS41-208ENST00000448833 SMIM17P0DL12 118 aa4.68□□□□□ -1.66
VPS41-208ENST00000448833 UBE2D3P61077 147 aa4.68□□□□□ -1.66
VPS41-208ENST00000448833 UBE2D2P62837 147 aa4.68□□□□□ -1.66
VPS41-208ENST00000448833 SPANXN1Q5VSR9 72 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms