RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 VPS13BQ7Z7G8 4022 aa13.85□□□□□ -0.19
SDC1-205ENST00000447124 A0A087WWL8 130 aa13.84□□□□□ -0.19
SDC1-205ENST00000447124 A0A0D9SG52 128 aa13.84□□□□□ -0.19
SDC1-205ENST00000447124 SYT8Q8NBV8 401 aa13.84□□□□□ -0.19
SDC1-205ENST00000447124 ZNF471Q9BX82 626 aaPredicted RBP13.84□□□□□ -0.19
SDC1-205ENST00000447124 UMAD1C9J7I0 102 aa13.83□□□□□ -0.2
SDC1-205ENST00000447124 BCL2L11O43521 198 aa13.83□□□□□ -0.2
SDC1-205ENST00000447124 PSCAO43653 123 aa13.83□□□□□ -0.2
SDC1-205ENST00000447124 GCSHP23434 173 aa13.83□□□□□ -0.2
SDC1-205ENST00000447124 PHLDA3Q9Y5J5 127 aa13.83□□□□□ -0.2
SDC1-205ENST00000447124 SCO2A0A1W2PP80 73 aa13.82□□□□□ -0.2
SDC1-205ENST00000447124 M0R381 172 aa13.82□□□□□ -0.2
SDC1-205ENST00000447124 RHODO00212 210 aa13.82□□□□□ -0.2
SDC1-205ENST00000447124 TPT1P13693 172 aaKnown RBP13.82□□□□□ -0.2
SDC1-205ENST00000447124 FAM74A4Q5TZK3 123 aa13.82□□□□□ -0.2
SDC1-205ENST00000447124 MLST8Q9BVC4 326 aa13.82□□□□□ -0.2
SDC1-205ENST00000447124 KANTRA0A1W2PQU2 76 aa13.81□□□□□ -0.2
SDC1-205ENST00000447124 DAZ4Q86SG3 579 aaKnown RBP13.81□□□□□ -0.2
SDC1-205ENST00000447124 DAZ3Q9NR90 486 aaKnown RBP13.81□□□□□ -0.2
SDC1-205ENST00000447124 S100A9P06702 114 aaKnown RBP13.8□□□□□ -0.2
SDC1-205ENST00000447124 H2AFB1P0C5Y9 115 aa13.8□□□□□ -0.2
SDC1-205ENST00000447124 CCL20P78556 96 aa13.8□□□□□ -0.2
SDC1-205ENST00000447124 RPL19P84098 196 aaKnown RBP13.8□□□□□ -0.2
SDC1-205ENST00000447124 TMUB2Q71RG4 321 aa13.8□□□□□ -0.2
SDC1-205ENST00000447124 BAGE2Q86Y30 109 aa13.8□□□□□ -0.2
SDC1-205ENST00000447124 WFDC2Q14508 124 aa13.79□□□□□ -0.2
SDC1-205ENST00000447124 LAGE3Q14657 143 aa13.79□□□□□ -0.2
SDC1-205ENST00000447124 Q8N814 137 aa13.79□□□□□ -0.2
SDC1-205ENST00000447124 IGLV5-52A0A0A0MRZ9 124 aa13.78□□□□□ -0.2
SDC1-205ENST00000447124 EPM2AB3EWF7 344 aa13.78□□□□□ -0.2
SDC1-205ENST00000447124 ZFP82Q8N141 532 aa13.78□□□□□ -0.2
SDC1-205ENST00000447124 A0A087WWC5 75 aa13.77□□□□□ -0.21
SDC1-205ENST00000447124 PFDN1O60925 122 aa13.76□□□□□ -0.21
SDC1-205ENST00000447124 OR10AG1Q8NH19 301 aa13.76□□□□□ -0.21
SDC1-205ENST00000447124 NTN5Q8WTR8 489 aaPredicted RBP13.76□□□□□ -0.21
SDC1-205ENST00000447124 DNAJC30Q96LL9 226 aa13.76□□□□□ -0.21
SDC1-205ENST00000447124 SSBP4Q9BWG4 385 aaPredicted RBP13.76□□□□□ -0.21
SDC1-205ENST00000447124 TM2D2Q9BX73 214 aa13.76□□□□□ -0.21
SDC1-205ENST00000447124 EIF5AP63241 154 aaKnown RBP13.75□□□□□ -0.21
SDC1-205ENST00000447124 HAMPP81172 84 aa13.75□□□□□ -0.21
SDC1-205ENST00000447124 NIT1Q86X76 327 aa13.75□□□□□ -0.21
SDC1-205ENST00000447124 TRAV8-3A0A0A6YYJ7 113 aa13.74□□□□□ -0.21
SDC1-205ENST00000447124 MUC21A0A0G2JKD1 596 aa13.74□□□□□ -0.21
SDC1-205ENST00000447124 TRBV10-1A0A0K0K1A3 114 aa13.74□□□□□ -0.21
SDC1-205ENST00000447124 MUC21A0A140T8X8 626 aa13.74□□□□□ -0.21
SDC1-205ENST00000447124 SNAI2O43623 268 aa13.74□□□□□ -0.21
SDC1-205ENST00000447124 SMR3BP02814 79 aaPredicted RBP13.74□□□□□ -0.21
SDC1-205ENST00000447124 CXCL1P09341 107 aa13.74□□□□□ -0.21
SDC1-205ENST00000447124 UBE2D3P61077 147 aa13.74□□□□□ -0.21
SDC1-205ENST00000447124 UBE2D2P62837 147 aa13.74□□□□□ -0.21
SDC1-205ENST00000447124 FAM30AQ9NZY2 134 aa13.74□□□□□ -0.21
SDC1-205ENST00000447124 TRBV7-3A0A075B6L6 115 aa13.72□□□□□ -0.21
SDC1-205ENST00000447124 TRAV1-1A0A0B4J248 108 aa13.72□□□□□ -0.21
SDC1-205ENST00000447124 RPL35P42766 123 aaKnown RBP13.72□□□□□ -0.21
SDC1-205ENST00000447124 RPL36AP83881 106 aaKnown RBP13.72□□□□□ -0.21
SDC1-205ENST00000447124 PRR27Q6MZM9 219 aa13.72□□□□□ -0.21
SDC1-205ENST00000447124 OR10G8Q8NGN5 311 aa13.72□□□□□ -0.21
SDC1-205ENST00000447124 RPL36ALQ969Q0 106 aaKnown RBP13.72□□□□□ -0.21
SDC1-205ENST00000447124 DERL1Q9BUN8 251 aa13.72□□□□□ -0.21
SDC1-205ENST00000447124 GNG13Q9P2W3 67 aa13.72□□□□□ -0.21
SDC1-205ENST00000447124 LECT2O14960 151 aa13.71□□□□□ -0.21
SDC1-205ENST00000447124 RAB4BP61018 213 aa13.71□□□□□ -0.21
SDC1-205ENST00000447124 TOR2AQ5JU69 321 aa13.71□□□□□ -0.21
SDC1-205ENST00000447124 Q5VSD8 79 aa13.71□□□□□ -0.21
SDC1-205ENST00000447124 C11orf52Q96A22 123 aa13.71□□□□□ -0.21
SDC1-205ENST00000447124 KLK12Q9UKR0 248 aa13.71□□□□□ -0.21
SDC1-205ENST00000447124 HERC1Q15751 4861 aa13.71□□□□□ -0.22
SDC1-205ENST00000447124 IGLV2-8P01709 118 aa13.7□□□□□ -0.22
SDC1-205ENST00000447124 OR5AL1P0C617 328 aa13.7□□□□□ -0.22
SDC1-205ENST00000447124 SSTP61278 116 aa13.7□□□□□ -0.22
SDC1-205ENST00000447124 NEXN-AS1Q8NBZ9 246 aa13.7□□□□□ -0.22
SDC1-205ENST00000447124 BAALCQ8WXS3 180 aa13.7□□□□□ -0.22
SDC1-205ENST00000447124 TMEM70Q9BUB7 260 aa13.7□□□□□ -0.22
SDC1-205ENST00000447124 MANBALQ9NQG1 85 aa13.69□□□□□ -0.22
SDC1-205ENST00000447124 KIF25-AS1Q9Y6Z4 181 aa13.69□□□□□ -0.22
SDC1-205ENST00000447124 INAFM2P0DMQ5 153 aa13.68□□□□□ -0.22
SDC1-205ENST00000447124 SPANXN1Q5VSR9 72 aa13.68□□□□□ -0.22
SDC1-205ENST00000447124 FRZBQ92765 325 aa13.68□□□□□ -0.22
SDC1-205ENST00000447124 URGCP-MRPS24S4R325 110 aa13.68□□□□□ -0.22
SDC1-205ENST00000447124 RAB19A4D1S5 217 aa13.67□□□□□ -0.22
SDC1-205ENST00000447124 SULT1A2P50226 295 aa13.67□□□□□ -0.22
SDC1-205ENST00000447124 RAB5CP51148 216 aa13.67□□□□□ -0.22
SDC1-205ENST00000447124 ZNF56Q15929 161 aa13.67□□□□□ -0.22
SDC1-205ENST00000447124 RBFOX3A6NFN3 312 aa13.66□□□□□ -0.22
SDC1-205ENST00000447124 GZMBP10144 247 aa13.66□□□□□ -0.22
SDC1-205ENST00000447124 CENPWQ5EE01 88 aa13.66□□□□□ -0.22
SDC1-205ENST00000447124 FLG2Q5D862 2391 aaPredicted RBP13.65□□□□□ -0.22
SDC1-205ENST00000447124 SRRM2Q9UQ35 2752 aaKnown RBP13.65□□□□□ -0.22
SDC1-205ENST00000447124 IGKV2D-24A0A075B6R9 120 aa13.65□□□□□ -0.22
SDC1-205ENST00000447124 A0A087WX48 190 aa13.65□□□□□ -0.22
SDC1-205ENST00000447124 TRBV6-8A0A0A6YYG3 113 aa13.65□□□□□ -0.22
SDC1-205ENST00000447124 UBE2WQ96B02 151 aa13.65□□□□□ -0.22
SDC1-205ENST00000447124 CHCHD7Q9BUK0 85 aa13.65□□□□□ -0.22
SDC1-205ENST00000447124 COX11Q9Y6N1 276 aa13.65□□□□□ -0.22
SDC1-205ENST00000447124 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.64□□□□□ -0.23
SDC1-205ENST00000447124 C19orf71A6NCJ1 209 aa13.64□□□□□ -0.23
SDC1-205ENST00000447124 F5H697 171 aa13.64□□□□□ -0.23
SDC1-205ENST00000447124 C1QBP02746 253 aa13.64□□□□□ -0.23
SDC1-205ENST00000447124 TCTE3Q8IZS6 198 aa13.64□□□□□ -0.23
SDC1-205ENST00000447124 TMEM262E9PQX1 116 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms