RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 XKRY2A2RUG3 117 aa7.89□□□□□ -1.15
COL28A1-203ENST00000435823 FAM74A4Q5TZK3 123 aa7.89□□□□□ -1.15
COL28A1-203ENST00000435823 ZNF575Q86XF7 245 aa7.89□□□□□ -1.15
COL28A1-203ENST00000435823 OR2D3Q8NGH3 330 aa7.89□□□□□ -1.15
COL28A1-203ENST00000435823 SFRP2Q96HF1 295 aa7.89□□□□□ -1.15
COL28A1-203ENST00000435823 C19orf71A6NCJ1 209 aa7.88□□□□□ -1.15
COL28A1-203ENST00000435823 SNAI2O43623 268 aa7.88□□□□□ -1.15
COL28A1-203ENST00000435823 P01737 135 aa7.88□□□□□ -1.15
COL28A1-203ENST00000435823 OR5AL1P0C617 328 aa7.88□□□□□ -1.15
COL28A1-203ENST00000435823 CEBPGP53567 150 aa7.88□□□□□ -1.15
COL28A1-203ENST00000435823 C1orf134Q5TEV5 83 aa7.88□□□□□ -1.15
COL28A1-203ENST00000435823 SPANXN1Q5VSR9 72 aa7.88□□□□□ -1.15
COL28A1-203ENST00000435823 TEX261Q6UWH6 196 aa7.88□□□□□ -1.15
COL28A1-203ENST00000435823 JPT2Q9H910 190 aa7.88□□□□□ -1.15
COL28A1-203ENST00000435823 A0A087WWL8 130 aa7.87□□□□□ -1.15
COL28A1-203ENST00000435823 A0A1W2PPQ1 181 aa7.87□□□□□ -1.15
COL28A1-203ENST00000435823 SIVA1O15304 175 aa7.87□□□□□ -1.15
COL28A1-203ENST00000435823 NDUFS6O75380 124 aaKnown RBP7.87□□□□□ -1.15
COL28A1-203ENST00000435823 NXPH4O95158 308 aa7.87□□□□□ -1.15
COL28A1-203ENST00000435823 UFSP1Q6NVU6 142 aa7.87□□□□□ -1.15
COL28A1-203ENST00000435823 OR10AG1Q8NH19 301 aa7.87□□□□□ -1.15
COL28A1-203ENST00000435823 FAM210AQ96ND0 272 aa7.87□□□□□ -1.15
COL28A1-203ENST00000435823 SSBP4Q9BWG4 385 aaPredicted RBP7.87□□□□□ -1.15
COL28A1-203ENST00000435823 SAMD10Q9BYL1 202 aa7.87□□□□□ -1.15
COL28A1-203ENST00000435823 DNAH10Q8IVF4 4471 aa7.87□□□□□ -1.15
COL28A1-203ENST00000435823 RTL8CO15255 209 aa7.86□□□□□ -1.15
COL28A1-203ENST00000435823 TIRAPP58753 221 aa7.86□□□□□ -1.15
COL28A1-203ENST00000435823 C6orf223Q8N319 242 aa7.86□□□□□ -1.15
COL28A1-203ENST00000435823 FER1L6-AS1Q8NA97 138 aa7.86□□□□□ -1.15
COL28A1-203ENST00000435823 OCC1Q8TAD7 63 aa7.86□□□□□ -1.15
COL28A1-203ENST00000435823 TPPP3Q9BW30 176 aa7.86□□□□□ -1.15
COL28A1-203ENST00000435823 GAGE12JA6NER3 117 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 PRSS29PA6NIE9 313 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 CRYGDP07320 174 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 SMIM17P0DL12 118 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 GZMBP10144 247 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 SSTP61278 116 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 GAGE1Q13065 139 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 GAGE4Q13068 117 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 GAGE5Q13069 117 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 GAGE13Q4V321 117 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 NUDT10Q8NFP7 164 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 ATP6V0E2Q8NHE4 81 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 NUDT11Q96G61 164 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 SMIM7Q9BQ49 75 aa7.85□□□□□ -1.15
COL28A1-203ENST00000435823 EPPK1P58107 5090 aaKnown RBP7.85□□□□□ -1.15
COL28A1-203ENST00000435823 TRAV8-6A0A0B4J262 113 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 MUC21A0A0G2JKD1 596 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 MUC21A0A140T8X8 626 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 F2Z2F3 143 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 K7EN84 100 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 IGLC6P0CF74 106 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 BTF3P20290 206 aaKnown RBP7.84□□□□□ -1.15
COL28A1-203ENST00000435823 CACNG7P62955 275 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 ZNF56Q15929 161 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 Q6ZSN1 163 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 C14orf178Q8N769 122 aaPredicted RBP7.84□□□□□ -1.15
COL28A1-203ENST00000435823 AP1S3Q96PC3 154 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 RPP21Q9H633 154 aaKnown RBP7.84□□□□□ -1.15
COL28A1-203ENST00000435823 LY96Q9Y6Y9 160 aa7.84□□□□□ -1.15
COL28A1-203ENST00000435823 TRAV9-2A0A087WT02 112 aa7.83□□□□□ -1.16
COL28A1-203ENST00000435823 TRBV10-1A0A0K0K1A3 114 aa7.83□□□□□ -1.16
COL28A1-203ENST00000435823 ZNF727A8MUV8 499 aa7.83□□□□□ -1.16
COL28A1-203ENST00000435823 SRP19P09132 144 aaKnown RBP7.83□□□□□ -1.16
COL28A1-203ENST00000435823 RAB4BP61018 213 aa7.83□□□□□ -1.16
COL28A1-203ENST00000435823 WFDC10BQ8IUB3 73 aa7.83□□□□□ -1.16
COL28A1-203ENST00000435823 KRTAP4-9Q9BYQ8 210 aa7.83□□□□□ -1.16
COL28A1-203ENST00000435823 RNASE7Q9H1E1 156 aaKnown RBP7.83□□□□□ -1.16
COL28A1-203ENST00000435823 GTSF1LQ9H1H1 148 aa7.83□□□□□ -1.16
COL28A1-203ENST00000435823 F5H697 171 aa7.82□□□□□ -1.16
COL28A1-203ENST00000435823 K7EP13 123 aa7.82□□□□□ -1.16
COL28A1-203ENST00000435823 GATCO43716 136 aaKnown RBP7.82□□□□□ -1.16
COL28A1-203ENST00000435823 EVI2AP22794 236 aa7.82□□□□□ -1.16
COL28A1-203ENST00000435823 RPL36AP83881 106 aaKnown RBP7.82□□□□□ -1.16
COL28A1-203ENST00000435823 PEA15Q15121 130 aa7.82□□□□□ -1.16
COL28A1-203ENST00000435823 OR10J3Q5JRS4 329 aa7.82□□□□□ -1.16
COL28A1-203ENST00000435823 LELP1Q5T871 98 aa7.82□□□□□ -1.16
COL28A1-203ENST00000435823 FAM231DQ6ZW35 169 aa7.82□□□□□ -1.16
COL28A1-203ENST00000435823 RPL36ALQ969Q0 106 aaKnown RBP7.82□□□□□ -1.16
COL28A1-203ENST00000435823 KRTAP1-5Q9BYS1 174 aa7.82□□□□□ -1.16
COL28A1-203ENST00000435823 DNAH10OSP0CZ25 163 aa7.81□□□□□ -1.16
COL28A1-203ENST00000435823 LINC00694P0DN24 101 aa7.81□□□□□ -1.16
COL28A1-203ENST00000435823 ERVFC1-1P60608 527 aa7.81□□□□□ -1.16
COL28A1-203ENST00000435823 RAB14P61106 215 aa7.81□□□□□ -1.16
COL28A1-203ENST00000435823 FAM74A3Q4VXF1 159 aa7.81□□□□□ -1.16
COL28A1-203ENST00000435823 LYZL1Q6UWQ5 148 aa7.81□□□□□ -1.16
COL28A1-203ENST00000435823 SMDT1Q9H4I9 107 aa7.81□□□□□ -1.16
COL28A1-203ENST00000435823 A0A087WWC5 75 aa7.8□□□□□ -1.16
COL28A1-203ENST00000435823 IGHV3-38A0A0C4DH36 116 aa7.8□□□□□ -1.16
COL28A1-203ENST00000435823 A8MWL6 223 aa7.8□□□□□ -1.16
COL28A1-203ENST00000435823 TRGC1P0CF51 173 aa7.8□□□□□ -1.16
COL28A1-203ENST00000435823 CTRLP40313 264 aa7.8□□□□□ -1.16
COL28A1-203ENST00000435823 WDR73Q6P4I2 378 aa7.8□□□□□ -1.16
COL28A1-203ENST00000435823 LINC01551Q86U37 167 aa7.8□□□□□ -1.16
COL28A1-203ENST00000435823 C10orf126Q8N4M7 172 aa7.8□□□□□ -1.16
COL28A1-203ENST00000435823 FRAS1Q86XX4 4008 aa7.8□□□□□ -1.16
COL28A1-203ENST00000435823 DNAH17Q9UFH2 4485 aa7.8□□□□□ -1.16
COL28A1-203ENST00000435823 DNAH2Q9P225 4427 aa7.79□□□□□ -1.16
COL28A1-203ENST00000435823 TRBV7-3A0A075B6L6 115 aa7.79□□□□□ -1.16
COL28A1-203ENST00000435823 MGPP08493 103 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms