RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 UBE2E2Q96LR5 201 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 F8P00451 2351 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 CD5LO43866 347 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 PSMG3-AS1Q96PY0 264 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 WFDC10AQ9H1F0 79 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 SPCS1Q9Y6A9 102 aa6.28□□□□□ -1.4
CD44-208ENST00000428726 MAST4O15021 2626 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 FGF6P10767 208 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 PLA2G2AP14555 144 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 GATA3P23771 443 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 DEFB131AP59861 70 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 CR1P17927 2039 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 RPL39P62891 51 aaKnown RBP6.27□□□□□ -1.41
CD44-208ENST00000428726 TCTEX1D4Q5JR98 221 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 OR1N2Q8NGR9 330 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 MAP1LC3AQ9H492 121 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 SMPXQ9UHP9 88 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 LENEPQ9Y5L5 61 aa6.27□□□□□ -1.41
CD44-208ENST00000428726 A6NJY4 79 aa6.26□□□□□ -1.41
CD44-208ENST00000428726 MRPL35Q9NZE8 188 aaKnown RBP6.26□□□□□ -1.41
CD44-208ENST00000428726 KLHL30-AS1Q8NEE0 82 aa6.26□□□□□ -1.41
CD44-208ENST00000428726 FAM159AQ6UWV7 190 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 SH2D6Q7Z4S9 175 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 MAPKAPK5-AS1Q8N8E1 139 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 GTSF1LQ9H1H1 148 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 IGHV3-38A0A0C4DH36 116 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 OVOL1O14753 267 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 IGLV1-40P01703 118 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 IGHV3-53P01767 116 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 SMIM17P0DL12 118 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 SLC25A16P16260 332 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 SMIM15Q7Z3B0 74 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 H3BMG7 143 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 PSMB8P28062 276 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 DEFB113Q30KQ7 82 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 CEMP1Q6PRD7 247 aaPredicted RBP6.25□□□□□ -1.41
CD44-208ENST00000428726 DLX4Q92988 240 aaPredicted RBP6.25□□□□□ -1.41
CD44-208ENST00000428726 YAE1D1Q9NRH1 226 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 XCL2Q9UBD3 114 aa6.25□□□□□ -1.41
CD44-208ENST00000428726 K7ERU9 68 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 ASIPP42127 132 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 CFHR3Q02985 330 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 ZNF56Q15929 161 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 SAMD5Q5TGI4 173 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 NXT2Q9NPJ8 142 aaKnown RBP6.24□□□□□ -1.41
CD44-208ENST00000428726 ZNF580Q9UK33 172 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 PKD1L1Q8TDX9 2849 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 TEX48A0A1B0GUV7 120 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 A6NDN8 102 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 LINC01546A6NGU7 62 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 C9orf118A6NHY6 69 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 PRSS29PA6NIE9 313 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 SOCS3O14543 225 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 RNASE3P12724 160 aaKnown RBP6.24□□□□□ -1.41
CD44-208ENST00000428726 SMAGPQ0VAQ4 97 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 LGALS9BQ3B8N2 356 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 NSUN5P1Q3KNT7 163 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 LGALS9CQ6DKI2 356 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 TMEM61Q8N0U2 210 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 Q8N1Y9 231 aa6.24□□□□□ -1.41
CD44-208ENST00000428726 IGHV4-4A0A075B6R2 117 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 WFDC2Q14508 124 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 ADAMTSL5Q6ZMM2 481 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 BOD1L2Q8IYS8 172 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 ZNF702PQ9H963 129 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 VPREB3Q9UKI3 123 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 CYSLTR1Q9Y271 337 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 TRBV25-1A0A075B6N4 114 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 DCANP1Q8TF63 244 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 CHAC1Q9BUX1 264 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 CSTL1Q9H114 145 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 ESM1Q9NQ30 184 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 A0A096LNT2 108 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 TRAV21A0A0B4J279 112 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.23□□□□□ -1.41
CD44-208ENST00000428726 RBMY1A1P0DJD3 496 aaKnown RBP6.23□□□□□ -1.41
CD44-208ENST00000428726 RBMY1CP0DJD4 496 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 ODF1Q14990 250 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 RBMY1FQ15415 496 aaKnown RBP6.23□□□□□ -1.41
CD44-208ENST00000428726 CD300EQ496F6 205 aaPredicted RBP6.23□□□□□ -1.41
CD44-208ENST00000428726 GTF2H5Q6ZYL4 71 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 PHLDA1Q8WV24 401 aaPredicted RBP6.23□□□□□ -1.41
CD44-208ENST00000428726 RASL10AQ92737 203 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 HIST1H4GQ99525 98 aa6.23□□□□□ -1.41
CD44-208ENST00000428726 A0A1W2PPM0 123 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 J3QLI3 93 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 K7EMT4 169 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 DUSP14O95147 198 aaKnown RBP6.22□□□□□ -1.41
CD44-208ENST00000428726 IGKCP01834 107 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 FABP2P12104 132 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 INSL3P51460 131 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 ETDBQ3ZM63 59 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 TRBV7-9A0A0J9YWB2 115 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 SMIM13P0DJ93 91 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 SCGB2A2Q13296 93 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 HHLA3Q9XRX5 114 aa6.22□□□□□ -1.41
CD44-208ENST00000428726 ANK3Q12955 4377 aaKnown RBP6.22□□□□□ -1.41
CD44-208ENST00000428726 CD28P10747 220 aa6.21□□□□□ -1.41
CD44-208ENST00000428726 HSD52Q0P140 79 aa6.21□□□□□ -1.41
CD44-208ENST00000428726 ZNF876PQ49A33 203 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms