RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 APOC3P02656 99 aa8.47□□□□□ -1.05
LINC00539-202ENST00000423575 GATA1P15976 413 aaPredicted RBP8.47□□□□□ -1.05
LINC00539-202ENST00000423575 NTF3P20783 257 aa8.47□□□□□ -1.05
LINC00539-202ENST00000423575 NDUFA5Q16718 116 aa8.47□□□□□ -1.05
LINC00539-202ENST00000423575 FAM74A4Q5TZK3 123 aa8.47□□□□□ -1.05
LINC00539-202ENST00000423575 ZFP2Q6ZN57 461 aa8.47□□□□□ -1.05
LINC00539-202ENST00000423575 Q6ZSN1 163 aa8.47□□□□□ -1.05
LINC00539-202ENST00000423575 VSIG2Q96IQ7 327 aa8.47□□□□□ -1.05
LINC00539-202ENST00000423575 FAM210BQ96KR6 192 aa8.47□□□□□ -1.05
LINC00539-202ENST00000423575 NAT8BQ9UHF3 227 aa8.47□□□□□ -1.05
LINC00539-202ENST00000423575 PRO0255Q9UI72 69 aa8.47□□□□□ -1.05
LINC00539-202ENST00000423575 NACAE9PAV3 2078 aa8.46□□□□□ -1.05
LINC00539-202ENST00000423575 A0A1B0GUT8 65 aa8.46□□□□□ -1.06
LINC00539-202ENST00000423575 CIDEAO60543 219 aa8.46□□□□□ -1.06
LINC00539-202ENST00000423575 CRYBA4P53673 196 aa8.46□□□□□ -1.06
LINC00539-202ENST00000423575 C14orf178Q8N769 122 aaPredicted RBP8.46□□□□□ -1.06
LINC00539-202ENST00000423575 CLRN3Q8NCR9 226 aa8.46□□□□□ -1.06
LINC00539-202ENST00000423575 ANAPC16Q96DE5 110 aa8.46□□□□□ -1.06
LINC00539-202ENST00000423575 HHLA3Q9XRX5 114 aa8.46□□□□□ -1.06
LINC00539-202ENST00000423575 KIF25-AS1Q9Y6Z4 181 aa8.46□□□□□ -1.06
LINC00539-202ENST00000423575 C7orf77A4D0Y5 90 aa8.45□□□□□ -1.06
LINC00539-202ENST00000423575 PAX4O43316 350 aa8.45□□□□□ -1.06
LINC00539-202ENST00000423575 TRGC1P0CF51 173 aa8.45□□□□□ -1.06
LINC00539-202ENST00000423575 EVI2AP22794 236 aa8.45□□□□□ -1.06
LINC00539-202ENST00000423575 LINC00315P59091 139 aa8.45□□□□□ -1.06
LINC00539-202ENST00000423575 TWIST1Q15672 202 aa8.45□□□□□ -1.06
LINC00539-202ENST00000423575 BORCS7Q96B45 105 aa8.45□□□□□ -1.06
LINC00539-202ENST00000423575 CTDSP1Q9GZU7 261 aa8.45□□□□□ -1.06
LINC00539-202ENST00000423575 APLNQ9ULZ1 77 aa8.45□□□□□ -1.06
LINC00539-202ENST00000423575 SLAQ13239 276 aa8.44□□□□□ -1.06
LINC00539-202ENST00000423575 RHEBQ15382 184 aa8.44□□□□□ -1.06
LINC00539-202ENST00000423575 SLC25A29Q8N8R3 303 aa8.44□□□□□ -1.06
LINC00539-202ENST00000423575 DNAH1Q9P2D7 4330 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 SACSQ9NZJ4 4579 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 VPS13DQ5THJ4 4388 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 LOC100131303A0A0U1RQF7 123 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 TRBV6-4A0A1B0GX49 114 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 H3BNG1 76 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 NUDT3O95989 172 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 MGPP08493 103 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 SMIM17P0DL12 118 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 FAM3BP58499 235 aaPredicted RBP8.43□□□□□ -1.06
LINC00539-202ENST00000423575 RIGQ13278 110 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 ZNF56Q15929 161 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 MRPL54Q6P161 138 aaKnown RBP8.43□□□□□ -1.06
LINC00539-202ENST00000423575 SVBPQ8N300 66 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 C15orf53Q8NAA6 179 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 DPH3P1Q9H4G8 78 aa8.43□□□□□ -1.06
LINC00539-202ENST00000423575 A0A087WWC5 75 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 A0A096LPF7 62 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 A0A1B0GXF2 115 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 K7EQD1 137 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 SNAPINO95295 136 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 GYPEP15421 78 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 TCTAP57738 103 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 RHOHQ15669 191 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 RPS10P5Q9NQ39 176 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 Q9UF83 564 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 ALMS1Q8TCU4 4167 aa8.42□□□□□ -1.06
LINC00539-202ENST00000423575 F5H697 171 aa8.41□□□□□ -1.06
LINC00539-202ENST00000423575 P0DMU3 169 aa8.41□□□□□ -1.06
LINC00539-202ENST00000423575 FAM231AP0DMU4 169 aa8.41□□□□□ -1.06
LINC00539-202ENST00000423575 FAM231CP0DMU5 169 aa8.41□□□□□ -1.06
LINC00539-202ENST00000423575 RAB4BP61018 213 aa8.41□□□□□ -1.06
LINC00539-202ENST00000423575 IMMP2LQ96T52 175 aa8.41□□□□□ -1.06
LINC00539-202ENST00000423575 PRADC1Q9BSG0 188 aa8.41□□□□□ -1.06
LINC00539-202ENST00000423575 TMEM242Q9NWH2 141 aa8.41□□□□□ -1.06
LINC00539-202ENST00000423575 ICOSQ9Y6W8 199 aa8.41□□□□□ -1.06
LINC00539-202ENST00000423575 KMT2CQ8NEZ4 4911 aaKnown RBP8.4□□□□□ -1.06
LINC00539-202ENST00000423575 CAMPP49913 170 aa8.4□□□□□ -1.06
LINC00539-202ENST00000423575 HBBP68871 147 aa8.4□□□□□ -1.06
LINC00539-202ENST00000423575 SUMO4Q6EEV6 95 aa8.4□□□□□ -1.06
LINC00539-202ENST00000423575 ATRAIDQ6UW56 229 aa8.4□□□□□ -1.06
LINC00539-202ENST00000423575 SMIM15Q7Z3B0 74 aa8.4□□□□□ -1.06
LINC00539-202ENST00000423575 ATP5L2Q7Z4Y8 100 aa8.4□□□□□ -1.06
LINC00539-202ENST00000423575 TMEM191AQ9H0A3 160 aa8.4□□□□□ -1.06
LINC00539-202ENST00000423575 A0A1B0GW15 77 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 GAGE12JA6NER3 117 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 LINC00694P0DN24 101 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 SRIP30626 198 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 GAGE1Q13065 139 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 GAGE4Q13068 117 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 GAGE5Q13069 117 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 MRPL23Q16540 153 aaKnown RBP8.39□□□□□ -1.07
LINC00539-202ENST00000423575 GAGE13Q4V321 117 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 KCNIP4Q6PIL6 250 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 AMN1Q8IY45 258 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 RNF185Q96GF1 192 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 URGCP-MRPS24S4R325 110 aa8.39□□□□□ -1.07
LINC00539-202ENST00000423575 TRAV26-2A0A0B4J265 109 aa8.38□□□□□ -1.07
LINC00539-202ENST00000423575 TRBV10-1A0A0K0K1A3 114 aa8.38□□□□□ -1.07
LINC00539-202ENST00000423575 M0QY20 66 aa8.38□□□□□ -1.07
LINC00539-202ENST00000423575 GATD1Q8NB37 220 aa8.38□□□□□ -1.07
LINC00539-202ENST00000423575 NEXN-AS1Q8NBZ9 246 aa8.38□□□□□ -1.07
LINC00539-202ENST00000423575 BTF3L4Q96K17 158 aa8.38□□□□□ -1.07
LINC00539-202ENST00000423575 TRAV9-1A0A075B6T8 112 aa8.37□□□□□ -1.07
LINC00539-202ENST00000423575 S100A8P05109 93 aa8.37□□□□□ -1.07
LINC00539-202ENST00000423575 S100PP25815 95 aa8.37□□□□□ -1.07
LINC00539-202ENST00000423575 NEGR1Q7Z3B1 354 aa8.37□□□□□ -1.07
LINC00539-202ENST00000423575 H7C1H1 209 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms