RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TRBV24-1A0A075B6N3 115 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 SMIM9A6NGZ8 99 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 S100PP25815 95 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 ADIRFQ15847 76 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 GCSAMLQ5JQS6 135 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 BTF3L4Q96K17 158 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 TMEM167BQ9NRX6 74 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 DHRS4-AS1Q9P1J3 65 aa4.5□□□□□ -1.69
USP40-202ENST00000409945 GCHFRP30047 84 aa4.49□□□□□ -1.69
USP40-202ENST00000409945 RPS10P46783 165 aaKnown RBP4.49□□□□□ -1.69
USP40-202ENST00000409945 RPL23P62829 140 aaKnown RBP4.49□□□□□ -1.69
USP40-202ENST00000409945 FAM78BQ5VT40 261 aa4.49□□□□□ -1.69
USP40-202ENST00000409945 OR10J6PQ8NGY7 276 aa4.49□□□□□ -1.69
USP40-202ENST00000409945 TCEAL7Q9BRU2 100 aa4.49□□□□□ -1.69
USP40-202ENST00000409945 MRPL32Q9BYC8 188 aaKnown RBP4.49□□□□□ -1.69
USP40-202ENST00000409945 XCL2Q9UBD3 114 aa4.49□□□□□ -1.69
USP40-202ENST00000409945 FUT9Q9Y231 359 aa4.49□□□□□ -1.69
USP40-202ENST00000409945 DNAH7Q8WXX0 4024 aa4.49□□□□□ -1.69
USP40-202ENST00000409945 IGHV3OR16-12A0A075B7B8 117 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 TRBV7-9A0A0J9YWB2 115 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 A0A0J9YX75 114 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 H7BYZ3 331 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 PPP1R2P9O14990 202 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 EIF3GO75821 320 aaKnown RBP eCLIP4.48□□□□□ -1.69
USP40-202ENST00000409945 INSP01308 110 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 S100A8P05109 93 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 TSPOP30536 169 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 AKR1D1P51857 326 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 FAM210BQ96KR6 192 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 ATP5G3P48201 142 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 TCTAP57738 103 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 HIST1H1AQ02539 215 aaPredicted RBP4.48□□□□□ -1.69
USP40-202ENST00000409945 CEMP1Q6PRD7 247 aaPredicted RBP4.48□□□□□ -1.69
USP40-202ENST00000409945 LINC01551Q86U37 167 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 LY96Q9Y6Y9 160 aa4.48□□□□□ -1.69
USP40-202ENST00000409945 TGIF2-C20orf24A0A0A6YYL0 155 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 C9JCJ5 164 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 ZNF253O75346 499 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 TSPAN13O95857 204 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 CXCL1P09341 107 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 PDE6HQ13956 83 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 RRN3P1Q2M238 152 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 LINC00242Q5T6M2 205 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 PATE2Q6UY27 113 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 TMEM256Q8N2U0 113 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 OR2D3Q8NGH3 330 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 IGF2BP2-AS1Q96M15 143 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 IMMP2LQ96T52 175 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 PYGO2Q9BRQ0 406 aa4.47□□□□□ -1.69
USP40-202ENST00000409945 LCE6AA0A183 80 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 A0A1W2PRE2 83 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 OR7C2O60412 319 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 PFN1P07737 140 aaKnown RBP4.46□□□□□ -1.69
USP40-202ENST00000409945 SPART-AS1P0CW21 52 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 SMIM6P0DI80 62 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 HIST1H1EP10412 219 aaKnown RBP4.46□□□□□ -1.69
USP40-202ENST00000409945 RPL35P42766 123 aaKnown RBP4.46□□□□□ -1.69
USP40-202ENST00000409945 CSN1S1P47710 185 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 FXYD7P58549 80 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 FABP9Q0Z7S8 132 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 MIR17HGQ75NE6 70 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 RNF182Q8N6D2 247 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 OR8A1Q8NGG7 326 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 ZNF331Q9NQX6 463 aaPredicted RBP4.46□□□□□ -1.69
USP40-202ENST00000409945 TMEM14CQ9P0S9 112 aa4.46□□□□□ -1.69
USP40-202ENST00000409945 YTHDF2Q9Y5A9 579 aaKnown RBP4.46□□□□□ -1.69
USP40-202ENST00000409945 TRAV10A0A0B4J240 114 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 F6UB75 175 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 DEFB4AO15263 64 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 TYMSP04818 313 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 GDF5OSQ5U4N7 250 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 Q8NAQ8 132 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 CSNK1G2-AS1Q8NCQ2 148 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 BAALCQ8WXS3 180 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 SFRP2Q96HF1 295 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 C20orf144Q9BQM9 153 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 V9GYY9 64 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 AGRNO00468 2067 aa4.46□□□□□ -1.7
USP40-202ENST00000409945 TRAV9-1A0A075B6T8 112 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 TRAV9-2A0A087WT02 112 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 K7EN84 100 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST1H2BKO60814 126 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 TRGC2P03986 189 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST1H2BJP06899 126 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 IGLC2P0DOY2 106 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST1H2BOP23527 126 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HLA-DMBP28068 263 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST1H2BBP33778 126 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 LEPP41159 167 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 EMP1P54849 157 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST1H2BDP58876 126 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST1H2BCP62807 126 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 UBE2L3P68036 154 aaKnown RBP4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST2H2BEQ16778 126 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 SPINK13Q1W4C9 94 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.45□□□□□ -1.7
USP40-202ENST00000409945 ZNF705AQ6ZN79 300 aaPredicted RBP4.45□□□□□ -1.7
USP40-202ENST00000409945 BLNKQ8WV28 456 aa4.45□□□□□ -1.7
USP40-202ENST00000409945 HIST1H2BHQ93079 126 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms