RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 IGHV3-53P01767 116 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 RPL28P46779 137 aaKnown RBP2.56□□□□□ -2
HMGB1-204ENST00000399489 SUPT4H1P63272 117 aaKnown RBP2.56□□□□□ -2
HMGB1-204ENST00000399489 FUT5Q11128 374 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.56□□□□□ -2
HMGB1-204ENST00000399489 IGFL3Q6UXB1 125 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 ST20-AS1Q8NBB2 130 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 C1orf64Q8NEQ6 169 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 FAM213BQ8TBF2 198 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 CHCHD1Q96BP2 118 aaKnown RBP2.56□□□□□ -2
HMGB1-204ENST00000399489 DMDP11532 3685 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 POLEQ07864 2286 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 TNRC6AQ8NDV7 1962 aaKnown RBP2.56□□□□□ -2
HMGB1-204ENST00000399489 ZNF407Q9C0G0 2248 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 IGLV3-9A0A075B6K5 115 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 TRAV1-1A0A0B4J248 108 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 A0A1W2PPM0 123 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 ATOX1O00244 68 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 IGKCP01834 107 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 IGLV7-43P04211 117 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 PEBP1P30086 187 aaKnown RBP2.56□□□□□ -2
HMGB1-204ENST00000399489 SSR2P43308 183 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 KRTAP12-2P59991 146 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 ZNF117Q03924 483 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 ZNF79Q15937 498 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 BVES-AS1Q5T3Y7 98 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 C5orf38Q86SI9 138 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 LINC00612Q8N6U2 182 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 CCL4L1Q8NHW4 92 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 UBALD1Q8TB05 177 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 KLF14Q8TD94 323 aaPredicted RBP2.56□□□□□ -2
HMGB1-204ENST00000399489 PPDPFLQ8WWR9 84 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 PRR34Q9NV39 138 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 SIPA1L1O43166 1804 aa2.56□□□□□ -2
HMGB1-204ENST00000399489 ANKRD36CQ5JPF3 1778 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 CHD7Q9P2D1 2997 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 DDX60Q8IY21 1712 aaKnown RBP2.55□□□□□ -2
HMGB1-204ENST00000399489 TMEM235A6NFC5 223 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 A8MU10 97 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 C16orf90A8MZG2 172 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 J3QLW9 94 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 LYRM1O43325 122 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 CISD3P0C7P0 127 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 DNAH10OSP0CZ25 163 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 ASB16-AS1Q495Z4 193 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 SPATA45Q537H7 98 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 MGST2Q99735 147 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 NABP2Q9BQ15 211 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 NDUFB11Q9NX14 153 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 LY96Q9Y6Y9 160 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 NUP98P52948 1817 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 PARP14Q460N5 1801 aa2.55□□□□□ -2
HMGB1-204ENST00000399489 NUP214P35658 2090 aaPredicted RBP2.54□□□□□ -2
HMGB1-204ENST00000399489 EML6Q6ZMW3 1958 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 LAMB2P55268 1798 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 IGLV4-69A0A075B6H9 119 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 IGHV1-24A0A0C4DH33 117 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 hADV29S1A0JD25 119 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 A6NN06 94 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 H3BPC8 53 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 CREBL2O60519 120 aaPredicted RBP2.54□□□□□ -2
HMGB1-204ENST00000399489 PIPP12273 146 aaPredicted RBP2.54□□□□□ -2
HMGB1-204ENST00000399489 ADCYAP1P18509 176 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 COL8A2P25067 703 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 LGALSLQ3ZCW2 172 aaPredicted RBP2.54□□□□□ -2
HMGB1-204ENST00000399489 DYNAPQ8N1N2 210 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 Q8N8P6 123 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 REV3LO60673 3130 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 PIGBOS1A0A0B4J2F0 54 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 E7EQL1 145 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 WISP3O95389 354 aaPredicted RBP2.54□□□□□ -2
HMGB1-204ENST00000399489 KRTDAPP60985 99 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 CCL8P80075 99 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 INSL4Q14641 139 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 ETDBQ3ZM63 59 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 LCE3EQ5T5B0 92 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 Q6ZR54 194 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 HMGN2P46Q86SG4 172 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 MYOZ3Q8TDC0 251 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 AQP3Q92482 292 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 RETNLBQ9BQ08 111 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 FAM215AQ9Y5M1 114 aa2.54□□□□□ -2
HMGB1-204ENST00000399489 CHD9Q3L8U1 2897 aa2.53□□□□□ -2
HMGB1-204ENST00000399489 MAST2Q6P0Q8 1798 aa2.53□□□□□ -2
HMGB1-204ENST00000399489 CFAP47Q6ZTR5 3102 aa2.53□□□□□ -2
HMGB1-204ENST00000399489 PLXNB1O43157 2135 aa2.53□□□□□ -2
HMGB1-204ENST00000399489 SIX6O95475 246 aa2.53□□□□□ -2
HMGB1-204ENST00000399489 MSMBP08118 114 aa2.53□□□□□ -2
HMGB1-204ENST00000399489 NFYAP23511 347 aaPredicted RBP2.53□□□□□ -2
HMGB1-204ENST00000399489 AMELYQ99218 206 aa2.53□□□□□ -2
HMGB1-204ENST00000399489 LINC00467Q9BRT7 94 aa2.53□□□□□ -2
HMGB1-204ENST00000399489 CST11Q9H112 138 aa2.53□□□□□ -2
HMGB1-204ENST00000399489 SCN1AP35498 2009 aa2.53□□□□□ -2
HMGB1-204ENST00000399489 MYH13Q9UKX3 1938 aa2.53□□□□□ -2.01
HMGB1-204ENST00000399489 ARHGAP21Q5T5U3 1957 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 OBSL1O75147 1896 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 ADAMTS9Q9P2N4 1935 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 DOCK9Q9BZ29 2069 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 A0A087WWC5 75 aa2.52□□□□□ -2.01
HMGB1-204ENST00000399489 C7orf77A4D0Y5 90 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms