RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 DNAH3Q8TD57 4116 aa10.22□□□□□ -0.77
SKA1-202ENST00000398452 NXPH4O95158 308 aa10.21□□□□□ -0.77
SKA1-202ENST00000398452 MGPP08493 103 aa10.21□□□□□ -0.77
SKA1-202ENST00000398452 SPART-AS1P0CW21 52 aa10.21□□□□□ -0.77
SKA1-202ENST00000398452 RASL10AQ92737 203 aa10.21□□□□□ -0.77
SKA1-202ENST00000398452 B9D2Q9BPU9 175 aa10.21□□□□□ -0.77
SKA1-202ENST00000398452 MSRB1Q9NZV6 116 aa10.21□□□□□ -0.77
SKA1-202ENST00000398452 GAGE12BA1L429 117 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 F5H697 171 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 RHODO00212 210 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 GAGE7O76087 117 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 APCSP02743 223 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 GAGE12FP0CL80 117 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 GAGE12GP0CL81 117 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 GAGE12IP0CL82 117 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 FABP9Q0Z7S8 132 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 FAM74A4Q5TZK3 123 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 C14orf178Q8N769 122 aaPredicted RBP10.2□□□□□ -0.78
SKA1-202ENST00000398452 Q8NAQ8 132 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 OR4C5Q8NGB2 326 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 IL17DQ8TAD2 202 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 TM2D3Q9BRN9 247 aa10.2□□□□□ -0.78
SKA1-202ENST00000398452 MRPL18Q9H0U6 180 aaKnown RBP10.2□□□□□ -0.78
SKA1-202ENST00000398452 DEFB4AO15263 64 aa10.19□□□□□ -0.78
SKA1-202ENST00000398452 CIDEAO60543 219 aa10.19□□□□□ -0.78
SKA1-202ENST00000398452 DEFB130BP0DP73 79 aa10.19□□□□□ -0.78
SKA1-202ENST00000398452 DEFB130AP0DP74 79 aa10.19□□□□□ -0.78
SKA1-202ENST00000398452 EVI2AP22794 236 aa10.19□□□□□ -0.78
SKA1-202ENST00000398452 ZNF56Q15929 161 aa10.19□□□□□ -0.78
SKA1-202ENST00000398452 FAM222AQ5U5X8 452 aa10.19□□□□□ -0.78
SKA1-202ENST00000398452 TMEM136Q6ZRR5 245 aa10.19□□□□□ -0.78
SKA1-202ENST00000398452 Q6ZTI0 123 aa10.19□□□□□ -0.78
SKA1-202ENST00000398452 PLAC8L1A1L4L8 177 aa10.18□□□□□ -0.78
SKA1-202ENST00000398452 NHLRC4P0CG21 123 aaPredicted RBP10.18□□□□□ -0.78
SKA1-202ENST00000398452 DAD1P61803 113 aa10.18□□□□□ -0.78
SKA1-202ENST00000398452 FAM104BQ5XKR9 115 aa10.18□□□□□ -0.78
SKA1-202ENST00000398452 GATD1Q8NB37 220 aa10.18□□□□□ -0.78
SKA1-202ENST00000398452 C11orf68Q9H3H3 251 aaKnown RBP10.18□□□□□ -0.78
SKA1-202ENST00000398452 A0A087WWL8 130 aa10.17□□□□□ -0.78
SKA1-202ENST00000398452 TRAV4A0A0B4J268 109 aa10.17□□□□□ -0.78
SKA1-202ENST00000398452 C1orf196B1AJZ1 125 aa10.17□□□□□ -0.78
SKA1-202ENST00000398452 CKS2P33552 79 aa10.17□□□□□ -0.78
SKA1-202ENST00000398452 AMN1Q8IY45 258 aa10.17□□□□□ -0.78
SKA1-202ENST00000398452 DKK2Q9UBU2 259 aa10.17□□□□□ -0.78
SKA1-202ENST00000398452 H7C1H1 209 aa10.16□□□□□ -0.78
SKA1-202ENST00000398452 RS1O15537 224 aa10.16□□□□□ -0.78
SKA1-202ENST00000398452 PPBPP02775 128 aa10.16□□□□□ -0.78
SKA1-202ENST00000398452 TRGC2P03986 189 aa10.16□□□□□ -0.78
SKA1-202ENST00000398452 JPT2Q9H910 190 aa10.16□□□□□ -0.78
SKA1-202ENST00000398452 PPP1R17O96001 155 aa10.15□□□□□ -0.78
SKA1-202ENST00000398452 RAB4AP20338 218 aa10.15□□□□□ -0.78
SKA1-202ENST00000398452 RAB5BP61020 215 aa10.15□□□□□ -0.78
SKA1-202ENST00000398452 CFAP126Q5VTH2 177 aa10.15□□□□□ -0.78
SKA1-202ENST00000398452 ZFP2Q6ZN57 461 aa10.15□□□□□ -0.78
SKA1-202ENST00000398452 MRAP2Q96G30 205 aa10.15□□□□□ -0.78
SKA1-202ENST00000398452 IGHV3-73A0A0B4J1V6 119 aa10.14□□□□□ -0.79
SKA1-202ENST00000398452 TRGV4A0A0C4DH28 118 aa10.14□□□□□ -0.79
SKA1-202ENST00000398452 A0A0J9YWU9 116 aa10.14□□□□□ -0.79
SKA1-202ENST00000398452 IGHV3-53P01767 116 aa10.14□□□□□ -0.79
SKA1-202ENST00000398452 SLAQ13239 276 aa10.14□□□□□ -0.79
SKA1-202ENST00000398452 ORMDL3Q8N138 153 aa10.14□□□□□ -0.79
SKA1-202ENST00000398452 ATP5G1P05496 136 aa10.13□□□□□ -0.79
SKA1-202ENST00000398452 CRYGDP07320 174 aa10.13□□□□□ -0.79
SKA1-202ENST00000398452 KIAA1644Q3SXP7 199 aa10.13□□□□□ -0.79
SKA1-202ENST00000398452 MRPL51Q4U2R6 128 aaKnown RBP10.13□□□□□ -0.79
SKA1-202ENST00000398452 C18orf15Q96N68 181 aa10.13□□□□□ -0.79
SKA1-202ENST00000398452 SAMD10Q9BYL1 202 aa10.13□□□□□ -0.79
SKA1-202ENST00000398452 NBEAL2Q6ZNJ1 2754 aa10.12□□□□□ -0.79
SKA1-202ENST00000398452 D6R8Y8 96 aa10.12□□□□□ -0.79
SKA1-202ENST00000398452 LINC00612Q8N6U2 182 aa10.12□□□□□ -0.79
SKA1-202ENST00000398452 C11orf45Q8TAV5 145 aa10.12□□□□□ -0.79
SKA1-202ENST00000398452 ZNF479Q96JC4 524 aa10.12□□□□□ -0.79
SKA1-202ENST00000398452 LAMTOR2Q9Y2Q5 125 aa10.12□□□□□ -0.79
SKA1-202ENST00000398452 MUC4Q99102 2169 aa10.12□□□□□ -0.79
SKA1-202ENST00000398452 SUMO4Q6EEV6 95 aa10.11□□□□□ -0.79
SKA1-202ENST00000398452 RNF185Q96GF1 192 aa10.11□□□□□ -0.79
SKA1-202ENST00000398452 PRELID3AQ96N28 172 aa10.11□□□□□ -0.79
SKA1-202ENST00000398452 KIF25-AS1Q9Y6Z4 181 aa10.11□□□□□ -0.79
SKA1-202ENST00000398452 HTN3P15516 51 aa10.1□□□□□ -0.79
SKA1-202ENST00000398452 SRIP30626 198 aa10.1□□□□□ -0.79
SKA1-202ENST00000398452 OR10J3Q5JRS4 329 aa10.1□□□□□ -0.79
SKA1-202ENST00000398452 PRADC1Q9BSG0 188 aa10.1□□□□□ -0.79
SKA1-202ENST00000398452 CELA1Q9UNI1 258 aa10.1□□□□□ -0.79
SKA1-202ENST00000398452 COL7A1Q02388 2944 aa10.1□□□□□ -0.79
SKA1-202ENST00000398452 TRAV26-2A0A0B4J265 109 aa10.09□□□□□ -0.79
SKA1-202ENST00000398452 F5H768 121 aa10.09□□□□□ -0.79
SKA1-202ENST00000398452 SMKR1H3BMG3 65 aa10.09□□□□□ -0.79
SKA1-202ENST00000398452 NCR2O95944 276 aa10.09□□□□□ -0.79
SKA1-202ENST00000398452 MAP1LC3AQ9H492 121 aa10.09□□□□□ -0.79
SKA1-202ENST00000398452 TNFRSF18Q9Y5U5 241 aa10.09□□□□□ -0.79
SKA1-202ENST00000398452 K7EQD1 137 aa10.08□□□□□ -0.8
SKA1-202ENST00000398452 PHOX2AO14813 284 aa10.08□□□□□ -0.8
SKA1-202ENST00000398452 LINC00315P59091 139 aa10.08□□□□□ -0.8
SKA1-202ENST00000398452 RHOHQ15669 191 aa10.08□□□□□ -0.8
SKA1-202ENST00000398452 POM121L12Q8N7R1 296 aa10.08□□□□□ -0.8
SKA1-202ENST00000398452 KRTAP9-2Q9BYQ4 174 aa10.08□□□□□ -0.8
SKA1-202ENST00000398452 ST20Q9HBF5 79 aa10.08□□□□□ -0.8
SKA1-202ENST00000398452 HHLA3Q9XRX5 114 aa10.08□□□□□ -0.8
SKA1-202ENST00000398452 TRBV6-4A0A1B0GX49 114 aa10.07□□□□□ -0.8
SKA1-202ENST00000398452 TNFRSF6BO95407 300 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms