RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 OTOGQ6ZRI0 2925 aa11.12□□□□□ -0.63
GPC3-202ENST00000394299 DUSP14O95147 198 aaKnown RBP11.12□□□□□ -0.63
GPC3-202ENST00000394299 IGHV1OR15-1A0A075B7D0 117 aa11.12□□□□□ -0.63
GPC3-202ENST00000394299 H3BMM0 161 aa11.12□□□□□ -0.63
GPC3-202ENST00000394299 AP1S3Q96PC3 154 aa11.12□□□□□ -0.63
GPC3-202ENST00000394299 SETXQ7Z333 2677 aaKnown RBP11.12□□□□□ -0.63
GPC3-202ENST00000394299 PRSS47A8MTI9 375 aa11.11□□□□□ -0.63
GPC3-202ENST00000394299 CCL24O00175 119 aa11.11□□□□□ -0.63
GPC3-202ENST00000394299 SMIM17P0DL12 118 aa11.11□□□□□ -0.63
GPC3-202ENST00000394299 FAM74A4Q5TZK3 123 aa11.11□□□□□ -0.63
GPC3-202ENST00000394299 HSBP1L1C9JCN9 74 aa11.11□□□□□ -0.63
GPC3-202ENST00000394299 NXPH4O95158 308 aa11.11□□□□□ -0.63
GPC3-202ENST00000394299 SUMO2P61956 95 aaKnown RBP11.11□□□□□ -0.63
GPC3-202ENST00000394299 LAGE3Q14657 143 aa11.11□□□□□ -0.63
GPC3-202ENST00000394299 SMIM2Q9BVW6 85 aa11.11□□□□□ -0.63
GPC3-202ENST00000394299 MAP6D1Q9H9H5 199 aa11.11□□□□□ -0.63
GPC3-202ENST00000394299 C9orf85Q96MD7 179 aa11.1□□□□□ -0.63
GPC3-202ENST00000394299 ST20Q9HBF5 79 aa11.1□□□□□ -0.63
GPC3-202ENST00000394299 F5H697 171 aa11.1□□□□□ -0.63
GPC3-202ENST00000394299 PRSS1P07477 247 aa11.1□□□□□ -0.63
GPC3-202ENST00000394299 RNASE1P07998 156 aaKnown RBP11.1□□□□□ -0.63
GPC3-202ENST00000394299 HLA-DRB4P13762 266 aa11.1□□□□□ -0.63
GPC3-202ENST00000394299 HINT1P49773 126 aaPredicted RBP11.1□□□□□ -0.63
GPC3-202ENST00000394299 LGALS9BQ3B8N2 356 aa11.1□□□□□ -0.63
GPC3-202ENST00000394299 LGALS9CQ6DKI2 356 aa11.1□□□□□ -0.63
GPC3-202ENST00000394299 MRPL52Q86TS9 123 aaKnown RBP11.1□□□□□ -0.63
GPC3-202ENST00000394299 HLA-DRB4X5D2U9 266 aa11.1□□□□□ -0.63
GPC3-202ENST00000394299 ZNF256Q9Y2P7 627 aaPredicted RBP11.09□□□□□ -0.63
GPC3-202ENST00000394299 SUMO4Q6EEV6 95 aa11.09□□□□□ -0.63
GPC3-202ENST00000394299 DEFB125Q8N687 156 aa11.09□□□□□ -0.63
GPC3-202ENST00000394299 CBY3A6NI87 242 aa11.08□□□□□ -0.64
GPC3-202ENST00000394299 NUDT3O95989 172 aa11.08□□□□□ -0.64
GPC3-202ENST00000394299 FHL3Q13643 280 aa11.08□□□□□ -0.64
GPC3-202ENST00000394299 CSTL1Q9H114 145 aa11.08□□□□□ -0.64
GPC3-202ENST00000394299 JMJD1CQ15652 2540 aa11.07□□□□□ -0.64
GPC3-202ENST00000394299 LY6G6DO95868 133 aa11.07□□□□□ -0.64
GPC3-202ENST00000394299 NOTCH3Q9UM47 2321 aa11.07□□□□□ -0.64
GPC3-202ENST00000394299 CRYGDP07320 174 aa11.06□□□□□ -0.64
GPC3-202ENST00000394299 ODF1Q14990 250 aa11.06□□□□□ -0.64
GPC3-202ENST00000394299 ODF3L2Q3SX64 289 aa11.06□□□□□ -0.64
GPC3-202ENST00000394299 ZNF876PQ49A33 203 aa11.06□□□□□ -0.64
GPC3-202ENST00000394299 SLC25A34Q6PIV7 304 aa11.06□□□□□ -0.64
GPC3-202ENST00000394299 POM121L12Q8N7R1 296 aa11.06□□□□□ -0.64
GPC3-202ENST00000394299 ZNF418Q8TF45 676 aaPredicted RBP11.06□□□□□ -0.64
GPC3-202ENST00000394299 HILS1P60008 231 aa11.05□□□□□ -0.64
GPC3-202ENST00000394299 NSUN5P1Q3KNT7 163 aa11.05□□□□□ -0.64
GPC3-202ENST00000394299 RNASE8Q8TDE3 154 aaKnown RBP11.05□□□□□ -0.64
GPC3-202ENST00000394299 C20orf78Q9BR46 151 aa11.05□□□□□ -0.64
GPC3-202ENST00000394299 C16orf95Q9H693 158 aa11.05□□□□□ -0.64
GPC3-202ENST00000394299 MRPS16Q9Y3D3 137 aaKnown RBP11.05□□□□□ -0.64
GPC3-202ENST00000394299 TSSC4Q9Y5U2 329 aaPredicted RBP11.05□□□□□ -0.64
GPC3-202ENST00000394299 IGHV3-73A0A0B4J1V6 119 aa11.05□□□□□ -0.64
GPC3-202ENST00000394299 RBX1P62877 108 aa11.04□□□□□ -0.64
GPC3-202ENST00000394299 Q6ZVH6 145 aa11.04□□□□□ -0.64
GPC3-202ENST00000394299 A8MTW9 85 aa11.04□□□□□ -0.64
GPC3-202ENST00000394299 COL5A1-AS1Q5SY13 56 aa11.04□□□□□ -0.64
GPC3-202ENST00000394299 MORN3Q6PF18 240 aaPredicted RBP11.04□□□□□ -0.64
GPC3-202ENST00000394299 SPAG8Q99932 426 aaPredicted RBP11.04□□□□□ -0.64
GPC3-202ENST00000394299 TRAV2A0A0B4J234 112 aa11.03□□□□□ -0.64
GPC3-202ENST00000394299 PROK1P58294 105 aa11.03□□□□□ -0.64
GPC3-202ENST00000394299 ZNF56Q15929 161 aa11.03□□□□□ -0.64
GPC3-202ENST00000394299 MPV17L2Q567V2 206 aa11.03□□□□□ -0.64
GPC3-202ENST00000394299 XCL2Q9UBD3 114 aa11.03□□□□□ -0.64
GPC3-202ENST00000394299 COX8AP10176 69 aa11.03□□□□□ -0.64
GPC3-202ENST00000394299 TTTY13Q9BZ97 58 aa11.03□□□□□ -0.64
GPC3-202ENST00000394299 MRPL35Q9NZE8 188 aaKnown RBP11.03□□□□□ -0.64
GPC3-202ENST00000394299 HHLA3Q9XRX5 114 aa11.03□□□□□ -0.64
GPC3-202ENST00000394299 FN1P02751 2386 aaKnown RBP11.03□□□□□ -0.64
GPC3-202ENST00000394299 ADARB2-AS1A8MUL3 147 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 KRTAP10-3P60369 221 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 PCP2Q8IVA1 136 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 SYT8Q8NBV8 401 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 TMEM160Q9NX00 188 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 IGKV2D-26A0A0A0MRZ7 120 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 CCL25O15444 150 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 POLR2KP53803 58 aaKnown RBP11.02□□□□□ -0.65
GPC3-202ENST00000394299 C2orf66Q6UXQ4 117 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 SCGB3A1Q96QR1 104 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 LINC01587Q99440 93 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 ZMAT4Q9H898 229 aa11.02□□□□□ -0.65
GPC3-202ENST00000394299 TRGV11A0A075B6L2 103 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 SAP30O75446 220 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 ATP5LO75964 103 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 FGF6P10767 208 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 NMUP48645 174 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 ORMDL2Q53FV1 153 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 TOMM6Q96B49 74 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 WFDC10AQ9H1F0 79 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 IGHV3OR16-12A0A075B7B8 117 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 SDHAF1A6NFY7 115 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 M0QY20 66 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 C2orf91Q6ZV80 131 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 GTSCR1Q86UQ5 136 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 Q9UF83 564 aa11.01□□□□□ -0.65
GPC3-202ENST00000394299 INAFM1C9JVW0 142 aa11□□□□□ -0.65
GPC3-202ENST00000394299 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11□□□□□ -0.65
GPC3-202ENST00000394299 P0DMU3 169 aa11□□□□□ -0.65
GPC3-202ENST00000394299 FAM231AP0DMU4 169 aa11□□□□□ -0.65
GPC3-202ENST00000394299 FAM231CP0DMU5 169 aa11□□□□□ -0.65
GPC3-202ENST00000394299 AZU1P20160 251 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 6.1 ms