RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 HSD52Q0P140 79 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 ZC2HC1AQ96GY0 325 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 CSMD1Q96PZ7 3565 aa7.82□□□□□ -1.16
COL6A3-205ENST00000392004 KMT2BQ9UMN6 2715 aaPredicted RBP7.82□□□□□ -1.16
COL6A3-205ENST00000392004 IGKV1D-37A0A075B6S9 117 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 PRM2P04554 102 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 OR5A1Q8NGJ0 315 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 ZNF414Q96IQ9 312 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 AGPAT4-IT1Q9H0P7 198 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 KIR3DS1Q14943 382 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 GPHB5Q86YW7 130 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 A0A0J9YY99 117 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 K7EP34 96 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 ZNF876PQ49A33 203 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 KLF12Q9Y4X4 402 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 NMUP48645 174 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 C14orf178Q8N769 122 aaPredicted RBP7.81□□□□□ -1.16
COL6A3-205ENST00000392004 SPAG8Q99932 426 aaPredicted RBP7.81□□□□□ -1.16
COL6A3-205ENST00000392004 ZNF747Q9BV97 191 aa7.81□□□□□ -1.16
COL6A3-205ENST00000392004 CELSR1Q9NYQ6 3014 aa7.8□□□□□ -1.16
COL6A3-205ENST00000392004 EVI2AP22794 236 aa7.8□□□□□ -1.16
COL6A3-205ENST00000392004 LEPP41159 167 aa7.8□□□□□ -1.16
COL6A3-205ENST00000392004 SMAGPQ0VAQ4 97 aa7.8□□□□□ -1.16
COL6A3-205ENST00000392004 ZMAT4Q9H898 229 aa7.8□□□□□ -1.16
COL6A3-205ENST00000392004 GNRH2O43555 120 aa7.8□□□□□ -1.16
COL6A3-205ENST00000392004 SH2D1AO60880 128 aa7.8□□□□□ -1.16
COL6A3-205ENST00000392004 LTAP01374 205 aa7.8□□□□□ -1.16
COL6A3-205ENST00000392004 LINC00322Q6ZN03 302 aaPredicted RBP7.8□□□□□ -1.16
COL6A3-205ENST00000392004 C1QTNF4Q9BXJ3 329 aa7.8□□□□□ -1.16
COL6A3-205ENST00000392004 A0A1B0GW15 77 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 G3V4G9 280 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 NCR2O95944 276 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 ARMS2P0C7Q2 107 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 PHLDA1Q8WV24 401 aaPredicted RBP7.79□□□□□ -1.16
COL6A3-205ENST00000392004 NOP10Q9NPE3 64 aaKnown RBP7.79□□□□□ -1.16
COL6A3-205ENST00000392004 C19orf71A6NCJ1 209 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 MLST8Q9BVC4 326 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 MRPL16Q9NX20 251 aaKnown RBP7.79□□□□□ -1.16
COL6A3-205ENST00000392004 A0A096LNT2 108 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 SMIM13P0DJ93 91 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 DEFB114Q30KQ6 69 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 C2orf91Q6ZV80 131 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 Q86TA4 180 aa7.79□□□□□ -1.16
COL6A3-205ENST00000392004 CACNG7P62955 275 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 ANXA2RQ3ZCQ2 193 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 UBE2DNLQ8IWF7 75 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 PRSS1P07477 247 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 DAD1P61803 113 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 OR11H2Q8NH07 326 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 TNFRSF18Q9Y5U5 241 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 GCSHP23434 173 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 PRELID3AQ96N28 172 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 ATP6V0BQ99437 205 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 SIGMAR1Q99720 223 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 CSMD2Q7Z408 3487 aa7.78□□□□□ -1.16
COL6A3-205ENST00000392004 NBPF19A0A087WUL8 3843 aa7.77□□□□□ -1.16
COL6A3-205ENST00000392004 APOC4P55056 127 aa7.77□□□□□ -1.17
COL6A3-205ENST00000392004 PROK1P58294 105 aa7.77□□□□□ -1.17
COL6A3-205ENST00000392004 IFI27P40305 119 aaPredicted RBP7.77□□□□□ -1.17
COL6A3-205ENST00000392004 SAMD5Q5TGI4 173 aa7.77□□□□□ -1.17
COL6A3-205ENST00000392004 Q6AWC8 147 aa7.77□□□□□ -1.17
COL6A3-205ENST00000392004 LYZL1Q6UWQ5 148 aa7.77□□□□□ -1.17
COL6A3-205ENST00000392004 GTSF1LQ9H1H1 148 aa7.77□□□□□ -1.17
COL6A3-205ENST00000392004 A0A1W2PPM0 123 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 CMC4P56277 68 aaPredicted RBP7.76□□□□□ -1.17
COL6A3-205ENST00000392004 C18orf15Q96N68 181 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 A4D1N5 150 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 UBE2L6O14933 153 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 IGLV1-40P01703 118 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 LGALS9BQ3B8N2 356 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 LGALS9CQ6DKI2 356 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 UFSP1Q6NVU6 142 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 MTURNQ8N3F0 131 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 IGKV3D-20A0A0C4DH25 116 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 SMKR1H3BMG3 65 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 HBDP02042 147 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 IFI27L1Q96BM0 104 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 DPH3Q96FX2 82 aa7.76□□□□□ -1.17
COL6A3-205ENST00000392004 INS-IGF2F8WCM5 200 aa7.75□□□□□ -1.17
COL6A3-205ENST00000392004 SIVA1O15304 175 aa7.75□□□□□ -1.17
COL6A3-205ENST00000392004 PDE6HQ13956 83 aa7.75□□□□□ -1.17
COL6A3-205ENST00000392004 ORMDL3Q8N138 153 aa7.75□□□□□ -1.17
COL6A3-205ENST00000392004 IGHV3-38A0A0C4DH36 116 aa7.75□□□□□ -1.17
COL6A3-205ENST00000392004 BOD1L2Q8IYS8 172 aa7.75□□□□□ -1.17
COL6A3-205ENST00000392004 D6R8Y8 96 aa7.75□□□□□ -1.17
COL6A3-205ENST00000392004 MAP6D1Q9H9H5 199 aa7.75□□□□□ -1.17
COL6A3-205ENST00000392004 CHCHD5Q9BSY4 110 aa7.75□□□□□ -1.17
COL6A3-205ENST00000392004 WI2-2373I1.2A0A1W2PRP0 233 aa7.74□□□□□ -1.17
COL6A3-205ENST00000392004 GAGE12JA6NER3 117 aa7.74□□□□□ -1.17
COL6A3-205ENST00000392004 KRTAP1-1Q07627 177 aa7.74□□□□□ -1.17
COL6A3-205ENST00000392004 GAGE4Q13068 117 aa7.74□□□□□ -1.17
COL6A3-205ENST00000392004 GAGE5Q13069 117 aa7.74□□□□□ -1.17
COL6A3-205ENST00000392004 GAGE13Q4V321 117 aa7.74□□□□□ -1.17
COL6A3-205ENST00000392004 SPENQ96T58 3664 aaKnown RBP7.74□□□□□ -1.17
COL6A3-205ENST00000392004 SIGLEC8Q9NYZ4 499 aa7.74□□□□□ -1.17
COL6A3-205ENST00000392004 TRGV11A0A075B6L2 103 aa7.74□□□□□ -1.17
COL6A3-205ENST00000392004 NPIPB6E9PJ23 425 aa7.74□□□□□ -1.17
COL6A3-205ENST00000392004 SVEP1Q4LDE5 3571 aa7.73□□□□□ -1.17
COL6A3-205ENST00000392004 IGHV1OR15-1A0A075B7D0 117 aa7.73□□□□□ -1.17
COL6A3-205ENST00000392004 FOXI2Q6ZQN5 318 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms