RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 EHBP1L1Q8N3D4 1523 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 PTPRZ1P23471 2315 aaPredicted RBP0.32□□□□□ -2.36
VPS13A-206ENST00000376646 NBEAQ8NFP9 2946 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 ARHGAP31Q2M1Z3 1444 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 MRC2Q9UBG0 1479 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 PNMA8CA0A1B0GUJ8 204 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 HIGD1CA8MV81 97 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 C9JAW5 83 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 FXYD1O00168 92 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 IGF2P01344 180 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 FXYD6P3P58550 94 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 ASB16-AS1Q495Z4 193 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 TCTE3Q8IZS6 198 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 OR4S1Q8NGB4 309 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 SLC35B3Q9H1N7 401 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 HIGD1AQ9Y241 93 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 HELZP42694 1942 aaKnown RBP0.32□□□□□ -2.36
VPS13A-206ENST00000376646 WNK1Q9H4A3 2382 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 ZMYM4Q5VZL5 1548 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 KIDINS220Q9ULH0 1771 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 APCP25054 2843 aa0.32□□□□□ -2.36
VPS13A-206ENST00000376646 UNC13AQ9UPW8 1703 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 CD3DP04234 171 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 SCTP09683 121 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 CCDC153Q494R4 210 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 UNQ5815/PRO19632Q6UWF5 114 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 TMEM91Q6ZNR0 172 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 C5orf56Q8N8D9 126 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 DMAC1Q96GE9 116 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 JPT1Q9UK76 154 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 PTPRGP23470 1445 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 CELSR1Q9NYQ6 3014 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 TRAV17A0A0B4J275 112 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 POLR2JP52435 117 aaKnown RBP0.31□□□□□ -2.36
VPS13A-206ENST00000376646 KRTAP21-1Q3LI58 79 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 C10orf99Q6UWK7 81 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 DEFB132Q7Z7B7 95 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 FAM103A1Q9BTL3 118 aaKnown RBP0.31□□□□□ -2.36
VPS13A-206ENST00000376646 ATG5Q9H1Y0 275 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 SHANK2Q9UPX8 1470 aa0.31□□□□□ -2.36
VPS13A-206ENST00000376646 SLIT1O75093 1534 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 ITPR2Q14571 2701 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 RREB1Q92766 1687 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 SMIM24O75264 130 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 OR2H2O95918 312 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 TFF1P04155 84 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 PLGLB1Q02325 96 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 DEFB123Q8N688 67 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 PYDC1Q8WXC3 89 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 AIF1LQ9BQI0 150 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 SPANXA1Q9NS26 97 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 DNAJC15Q9Y5T4 150 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 COL12A1Q99715 3063 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 AFDNP55196 1824 aaKnown RBP0.3□□□□□ -2.36
VPS13A-206ENST00000376646 CCKP06307 115 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 HLA-DRB4P13762 266 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 SPINK7P58062 85 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 SPANXCQ9NY87 97 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 HLA-DRB4X5D2U9 266 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 FRAS1Q86XX4 4008 aa0.3□□□□□ -2.36
VPS13A-206ENST00000376646 NIPBLQ6KC79 2804 aaeCLIP0.29□□□□□ -2.36
VPS13A-206ENST00000376646 BORCS7-ASMTA0A0B4J1R7 106 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 AKR1D1P51857 326 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 SPINK13Q1W4C9 94 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 CLLU1Q5K131 121 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 SLC25A26Q70HW3 274 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 DLEC1Q9Y238 1755 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.29□□□□□ -2.36
VPS13A-206ENST00000376646 LRBAP50851 2863 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 TRBV10-1A0A0K0K1A3 114 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 CPDO75976 1380 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 RBP4P02753 201 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 DBIP07108 87 aaKnown RBP0.29□□□□□ -2.36
VPS13A-206ENST00000376646 SCGB1A1P11684 91 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 RPL37P61927 97 aaKnown RBP0.29□□□□□ -2.36
VPS13A-206ENST00000376646 MAP1AP78559 2803 aaPredicted RBP0.29□□□□□ -2.36
VPS13A-206ENST00000376646 ERCC6Q03468 1493 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 SZT2Q5T011 3432 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 LELP1Q5T871 98 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 CLASP1Q7Z460 1538 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 SNX29P2Q8IUI4 249 aa0.29□□□□□ -2.36
VPS13A-206ENST00000376646 PRH1P02810 166 aa0.28□□□□□ -2.36
VPS13A-206ENST00000376646 PPDPFLQ8WWR9 84 aa0.28□□□□□ -2.36
VPS13A-206ENST00000376646 MAGOHBQ96A72 148 aaKnown RBP0.28□□□□□ -2.36
VPS13A-206ENST00000376646 TAS2R8Q9NYW2 309 aa0.28□□□□□ -2.36
VPS13A-206ENST00000376646 NOP16Q9Y3C1 178 aaKnown RBP0.28□□□□□ -2.36
VPS13A-206ENST00000376646 RELNP78509 3460 aa0.28□□□□□ -2.36
VPS13A-206ENST00000376646 SPEGQ15772 3267 aa0.28□□□□□ -2.36
VPS13A-206ENST00000376646 ESPL1Q14674 2120 aa0.28□□□□□ -2.36
VPS13A-206ENST00000376646 LRRC7Q96NW7 1537 aa0.28□□□□□ -2.37
VPS13A-206ENST00000376646 ARHGEF10O15013 1369 aa0.28□□□□□ -2.37
VPS13A-206ENST00000376646 LAMA3Q16787 3333 aa0.28□□□□□ -2.37
VPS13A-206ENST00000376646 MORN2Q502X0 79 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 PLAC8Q9NZF1 115 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 SPAG17Q6Q759 2223 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 VCANP13611 3396 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 BLMP54132 1417 aaPredicted RBP0.27□□□□□ -2.37
VPS13A-206ENST00000376646 CASZ1Q86V15 1759 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 CCDC171Q6TFL3 1326 aa0.27□□□□□ -2.37
VPS13A-206ENST00000376646 CXorf51AA0A1B0GTR3 108 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms