RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 PSMB8P28062 276 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 KAAG1Q9UBP8 84 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 FAM236AA0A1B0GUQ0 79 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 FAM236BA0A1B0GV22 79 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 LECT2O14960 151 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 HIGD2BQ4VC39 106 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 SVIPQ8NHG7 77 aa10.6□□□□□ -0.71
COL4A1-201ENST00000375820 ACYP1P07311 99 aa10.59□□□□□ -0.71
COL4A1-201ENST00000375820 TRBV12-3P01733 135 aa10.59□□□□□ -0.71
COL4A1-201ENST00000375820 CTSGP08311 255 aa10.59□□□□□ -0.71
COL4A1-201ENST00000375820 C4orf48Q5BLP8 95 aa10.59□□□□□ -0.71
COL4A1-201ENST00000375820 PATE2Q6UY27 113 aa10.59□□□□□ -0.71
COL4A1-201ENST00000375820 RNF138Q8WVD3 245 aa10.59□□□□□ -0.71
COL4A1-201ENST00000375820 NBASA2RRP1 2371 aa10.59□□□□□ -0.71
COL4A1-201ENST00000375820 DAZ2Q13117 558 aaKnown RBP10.58□□□□□ -0.71
COL4A1-201ENST00000375820 DAZ4Q86SG3 579 aaKnown RBP10.58□□□□□ -0.71
COL4A1-201ENST00000375820 DAZ3Q9NR90 486 aaKnown RBP10.58□□□□□ -0.71
COL4A1-201ENST00000375820 FXYD2P54710 66 aa10.58□□□□□ -0.72
COL4A1-201ENST00000375820 PCNX1Q96RV3 2341 aa10.58□□□□□ -0.72
COL4A1-201ENST00000375820 ZGRF1Q86YA3 2104 aa10.58□□□□□ -0.72
COL4A1-201ENST00000375820 IGKV2D-26A0A0A0MRZ7 120 aa10.58□□□□□ -0.72
COL4A1-201ENST00000375820 WFDC2Q14508 124 aa10.58□□□□□ -0.72
COL4A1-201ENST00000375820 C5orf56Q8N8D9 126 aa10.58□□□□□ -0.72
COL4A1-201ENST00000375820 C2orf70A6NJV1 201 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 GTSF1Q8WW33 167 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 P0DMU3 169 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 FAM231AP0DMU4 169 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 FAM231CP0DMU5 169 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 C16orf54Q6UWD8 224 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 TRAV26-1A0A087WT03 109 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 PLA2G5P39877 138 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 SIP14410 1827 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 NDUFA1O15239 70 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 MP68P56378 58 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 IGLV11-55A0A075B6I3 123 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 MDFICQ9P1T7 246 aa10.57□□□□□ -0.72
COL4A1-201ENST00000375820 TRBV7-3A0A075B6L6 115 aa10.56□□□□□ -0.72
COL4A1-201ENST00000375820 SMIM20Q8N5G0 67 aa10.56□□□□□ -0.72
COL4A1-201ENST00000375820 Q8N9W7 124 aa10.56□□□□□ -0.72
COL4A1-201ENST00000375820 A0A0B4J2C4 111 aa10.56□□□□□ -0.72
COL4A1-201ENST00000375820 FRMD6-AS1P0C7T7 363 aa10.56□□□□□ -0.72
COL4A1-201ENST00000375820 E7EUB6 86 aa10.56□□□□□ -0.72
COL4A1-201ENST00000375820 DEFB125Q8N687 156 aa10.56□□□□□ -0.72
COL4A1-201ENST00000375820 SPAG11BQ08648 103 aa10.55□□□□□ -0.72
COL4A1-201ENST00000375820 IGKV1-17P01599 117 aa10.55□□□□□ -0.72
COL4A1-201ENST00000375820 LGALS9O00182 355 aa10.55□□□□□ -0.72
COL4A1-201ENST00000375820 IGLV3-1P01715 115 aa10.55□□□□□ -0.72
COL4A1-201ENST00000375820 MIR7-3HGQ8N6C7 128 aa10.55□□□□□ -0.72
COL4A1-201ENST00000375820 PLXNA4Q9HCM2 1894 aa10.55□□□□□ -0.72
COL4A1-201ENST00000375820 POU2AF1Q16633 256 aa10.54□□□□□ -0.72
COL4A1-201ENST00000375820 ARHGAP21Q5T5U3 1957 aa10.54□□□□□ -0.72
COL4A1-201ENST00000375820 ADORA2A-AS1P86434 159 aa10.54□□□□□ -0.72
COL4A1-201ENST00000375820 RIF1Q5UIP0 2472 aaKnown RBP10.54□□□□□ -0.72
COL4A1-201ENST00000375820 SLX1AQ9BQ83 275 aa10.54□□□□□ -0.72
COL4A1-201ENST00000375820 UNQ9165/PRO28630Q6UXU0 137 aa10.54□□□□□ -0.72
COL4A1-201ENST00000375820 SHANK1Q9Y566 2161 aa10.54□□□□□ -0.72
COL4A1-201ENST00000375820 IGKV4-1P06312 121 aa10.53□□□□□ -0.72
COL4A1-201ENST00000375820 TP53TG3Q9ULZ0 132 aa10.53□□□□□ -0.72
COL4A1-201ENST00000375820 PTH2Q96A98 100 aa10.53□□□□□ -0.72
COL4A1-201ENST00000375820 PIP4P1Q86T03 277 aa10.53□□□□□ -0.72
COL4A1-201ENST00000375820 SIRPDQ9H106 197 aa10.53□□□□□ -0.72
COL4A1-201ENST00000375820 LINC01620Q4KN68 170 aa10.52□□□□□ -0.72
COL4A1-201ENST00000375820 PCNX2A6NKB5 2137 aa10.52□□□□□ -0.73
COL4A1-201ENST00000375820 MED13Q9UHV7 2174 aa10.52□□□□□ -0.73
COL4A1-201ENST00000375820 WI2-2373I1.2A0A1W2PRP0 233 aa10.52□□□□□ -0.73
COL4A1-201ENST00000375820 C10orf105Q8TEF2 133 aa10.52□□□□□ -0.73
COL4A1-201ENST00000375820 DIRC1Q969H9 104 aa10.52□□□□□ -0.73
COL4A1-201ENST00000375820 PLA2G2EQ9NZK7 142 aa10.51□□□□□ -0.73
COL4A1-201ENST00000375820 NFE4Q86UQ8 179 aa10.51□□□□□ -0.73
COL4A1-201ENST00000375820 FAM110AQ9BQ89 295 aa10.51□□□□□ -0.73
COL4A1-201ENST00000375820 C11orf86A6NJI1 115 aa10.51□□□□□ -0.73
COL4A1-201ENST00000375820 WISP2O76076 250 aa10.51□□□□□ -0.73
COL4A1-201ENST00000375820 CRYGBP07316 175 aa10.51□□□□□ -0.73
COL4A1-201ENST00000375820 H0YGX0 51 aa10.51□□□□□ -0.73
COL4A1-201ENST00000375820 SCXQ7RTU7 201 aa10.51□□□□□ -0.73
COL4A1-201ENST00000375820 TOMM6Q96B49 74 aa10.51□□□□□ -0.73
COL4A1-201ENST00000375820 MGAMO43451 1857 aa10.51□□□□□ -0.73
COL4A1-201ENST00000375820 LENEPQ9Y5L5 61 aa10.5□□□□□ -0.73
COL4A1-201ENST00000375820 Q8N7P7 452 aa10.5□□□□□ -0.73
COL4A1-201ENST00000375820 HIGD2AQ9BW72 106 aa10.5□□□□□ -0.73
COL4A1-201ENST00000375820 PLXNA2O75051 1894 aa10.5□□□□□ -0.73
COL4A1-201ENST00000375820 TEX22C9J3V5 150 aa10.49□□□□□ -0.73
COL4A1-201ENST00000375820 LINC01545Q5VT33 79 aa10.49□□□□□ -0.73
COL4A1-201ENST00000375820 Q6ZUT4 128 aa10.49□□□□□ -0.73
COL4A1-201ENST00000375820 MALRD1Q5VYJ5 2156 aa10.49□□□□□ -0.73
COL4A1-201ENST00000375820 TRAV23DV6A0A075B6W5 121 aa10.49□□□□□ -0.73
COL4A1-201ENST00000375820 SMAD5-AS1Q9Y6J3 95 aa10.49□□□□□ -0.73
COL4A1-201ENST00000375820 IL15RAQ13261 267 aa10.49□□□□□ -0.73
COL4A1-201ENST00000375820 SPTSSBQ8NFR3 76 aa10.48□□□□□ -0.73
COL4A1-201ENST00000375820 GPR179Q6PRD1 2367 aa10.48□□□□□ -0.73
COL4A1-201ENST00000375820 A0A0J9YWU9 116 aa10.48□□□□□ -0.73
COL4A1-201ENST00000375820 C4orf3Q8WVX3 66 aa10.48□□□□□ -0.73
COL4A1-201ENST00000375820 DSCAML1Q8TD84 2053 aa10.48□□□□□ -0.73
COL4A1-201ENST00000375820 MPLKIPQ8TAP9 179 aa10.48□□□□□ -0.73
COL4A1-201ENST00000375820 BRK1Q8WUW1 75 aa10.48□□□□□ -0.73
COL4A1-201ENST00000375820 MED13LQ71F56 2210 aa10.48□□□□□ -0.73
COL4A1-201ENST00000375820 LINC00269Q8N2A0 174 aa10.48□□□□□ -0.73
COL4A1-201ENST00000375820 FAM167A-AS1Q96KT0 104 aa10.48□□□□□ -0.73
COL4A1-201ENST00000375820 RNF152Q8N8N0 203 aa10.47□□□□□ -0.73
COL4A1-201ENST00000375820 LYPD6BQ8NI32 183 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms