RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 NDUFA4O00483 81 aa10.76□□□□□ -0.69
HMGA1-203ENST00000374116 TRBV12-3P01733 135 aa10.76□□□□□ -0.69
HMGA1-203ENST00000374116 ERCC8Q13216 396 aa10.76□□□□□ -0.69
HMGA1-203ENST00000374116 NDUFA11Q86Y39 141 aa10.76□□□□□ -0.69
HMGA1-203ENST00000374116 PCP2Q8IVA1 136 aa10.76□□□□□ -0.69
HMGA1-203ENST00000374116 C18orf15Q96N68 181 aa10.76□□□□□ -0.69
HMGA1-203ENST00000374116 ZMAT4Q9H898 229 aa10.76□□□□□ -0.69
HMGA1-203ENST00000374116 PRO0461Q9UI25 63 aa10.76□□□□□ -0.69
HMGA1-203ENST00000374116 IGHV3OR16-13A0A075B7E8 117 aa10.75□□□□□ -0.69
HMGA1-203ENST00000374116 IGHV3-74A0A0B4J1X5 117 aa10.75□□□□□ -0.69
HMGA1-203ENST00000374116 LINC01546A6NGU7 62 aa10.75□□□□□ -0.69
HMGA1-203ENST00000374116 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.75□□□□□ -0.69
HMGA1-203ENST00000374116 IGLC6P0CF74 106 aa10.75□□□□□ -0.69
HMGA1-203ENST00000374116 UBE2E2Q96LR5 201 aa10.75□□□□□ -0.69
HMGA1-203ENST00000374116 CHAC1Q9BUX1 264 aa10.75□□□□□ -0.69
HMGA1-203ENST00000374116 GEMIN7Q9H840 131 aaKnown RBP10.75□□□□□ -0.69
HMGA1-203ENST00000374116 IGHV3-49A0A0A0MS15 119 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 FAM104BQ5XKR9 115 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 GLMPQ8WWB7 406 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 IFI27L1Q96BM0 104 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 PKD1L1Q8TDX9 2849 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 TMEM213A2RRL7 107 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 OR11H12B2RN74 326 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 IGLL5B9A064 214 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 ORM1P02763 201 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 IFI27P40305 119 aaPredicted RBP10.74□□□□□ -0.69
HMGA1-203ENST00000374116 WFDC2Q14508 124 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 TMEM78Q5T7P6 136 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 CFAP161Q6P656 301 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 OR11H1Q8NG94 326 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 OR11H2Q8NH07 326 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 RAX2Q96IS3 184 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 AGPAT4-IT1Q9H0P7 198 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 SELENOKQ9Y6D0 94 aa10.74□□□□□ -0.69
HMGA1-203ENST00000374116 GCSHP23434 173 aa10.73□□□□□ -0.69
HMGA1-203ENST00000374116 C9orf47Q6ZRZ4 202 aa10.73□□□□□ -0.69
HMGA1-203ENST00000374116 CEND1Q8N111 149 aa10.73□□□□□ -0.69
HMGA1-203ENST00000374116 C4orf3Q8WVX3 66 aa10.73□□□□□ -0.69
HMGA1-203ENST00000374116 IGHV4OR15-8A0A075B7B6 117 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 A0A087WW49 117 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 LINC01619G3V211 115 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 NMUP48645 174 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 ZNF575Q86XF7 245 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 C16orf92Q96LL3 132 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 CNFNQ9BYD5 112 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 LGALS1P09382 135 aaKnown RBP10.72□□□□□ -0.69
HMGA1-203ENST00000374116 EVI2AP22794 236 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 TWIST1Q15672 202 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 UNQ9165/PRO28630Q6UXU0 137 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 ORMDL3Q8N138 153 aa10.72□□□□□ -0.69
HMGA1-203ENST00000374116 A0A1B0GWB2 263 aa10.71□□□□□ -0.69
HMGA1-203ENST00000374116 D6R8Y8 96 aa10.71□□□□□ -0.69
HMGA1-203ENST00000374116 CCL24O00175 119 aa10.71□□□□□ -0.69
HMGA1-203ENST00000374116 SLURP1P55000 103 aa10.71□□□□□ -0.69
HMGA1-203ENST00000374116 FAM106AQ4KMX7 169 aa10.71□□□□□ -0.69
HMGA1-203ENST00000374116 AMN1Q8IY45 258 aa10.71□□□□□ -0.69
HMGA1-203ENST00000374116 ZNF479Q96JC4 524 aa10.71□□□□□ -0.69
HMGA1-203ENST00000374116 PRELID3AQ96N28 172 aa10.71□□□□□ -0.69
HMGA1-203ENST00000374116 TIMM8BQ9Y5J9 83 aaPredicted RBP10.71□□□□□ -0.69
HMGA1-203ENST00000374116 PF4P02776 101 aa10.7□□□□□ -0.7
HMGA1-203ENST00000374116 MRPL51Q4U2R6 128 aaKnown RBP10.7□□□□□ -0.7
HMGA1-203ENST00000374116 CYSLTR1Q9Y271 337 aa10.7□□□□□ -0.7
HMGA1-203ENST00000374116 LENEPQ9Y5L5 61 aa10.7□□□□□ -0.7
HMGA1-203ENST00000374116 GAGE13Q4V321 117 aa10.7□□□□□ -0.7
HMGA1-203ENST00000374116 HHLA3Q9XRX5 114 aa10.7□□□□□ -0.7
HMGA1-203ENST00000374116 TRBV25-1A0A075B6N4 114 aa10.69□□□□□ -0.7
HMGA1-203ENST00000374116 K7ERJ3 54 aa10.69□□□□□ -0.7
HMGA1-203ENST00000374116 ETDBQ3ZM63 59 aa10.69□□□□□ -0.7
HMGA1-203ENST00000374116 CMYA5Q8N3K9 4069 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 ODF1Q14990 250 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 RRN3P1Q2M238 152 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 CDIP1Q9H305 208 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 NHP2Q9NX24 153 aaKnown RBP10.68□□□□□ -0.7
HMGA1-203ENST00000374116 NOTCH3Q9UM47 2321 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 IGKV3D-20A0A0C4DH25 116 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 OVOL1O14753 267 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 HOXD3P31249 432 aaPredicted RBP10.68□□□□□ -0.7
HMGA1-203ENST00000374116 CKS2P33552 79 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 TM4SF20Q53R12 229 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 GPHB5Q86YW7 130 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 DLX4Q92988 240 aaPredicted RBP10.68□□□□□ -0.7
HMGA1-203ENST00000374116 LINC00477Q96M19 166 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 C1QTNF4Q9BXJ3 329 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 ERG28Q9UKR5 140 aa10.68□□□□□ -0.7
HMGA1-203ENST00000374116 IGKV2D-26A0A0A0MRZ7 120 aa10.67□□□□□ -0.7
HMGA1-203ENST00000374116 SOCS3O14543 225 aa10.67□□□□□ -0.7
HMGA1-203ENST00000374116 C12orf74Q32Q52 190 aa10.67□□□□□ -0.7
HMGA1-203ENST00000374116 SH2D6Q7Z4S9 175 aa10.67□□□□□ -0.7
HMGA1-203ENST00000374116 C20orf173Q96LM9 149 aa10.67□□□□□ -0.7
HMGA1-203ENST00000374116 VCX2Q9H322 139 aa10.67□□□□□ -0.7
HMGA1-203ENST00000374116 DKK2Q9UBU2 259 aa10.67□□□□□ -0.7
HMGA1-203ENST00000374116 IGHV7-4-1A0A0J9YVY3 117 aa10.66□□□□□ -0.7
HMGA1-203ENST00000374116 H3BMG7 143 aa10.66□□□□□ -0.7
HMGA1-203ENST00000374116 FHL3Q13643 280 aa10.66□□□□□ -0.7
HMGA1-203ENST00000374116 OR10J6PQ8NGY7 276 aa10.66□□□□□ -0.7
HMGA1-203ENST00000374116 MSRB1Q9NZV6 116 aa10.66□□□□□ -0.7
HMGA1-203ENST00000374116 C11orf21Q9P2W6 132 aa10.66□□□□□ -0.7
HMGA1-203ENST00000374116 LOC389332A0A1B0GUA5 103 aa10.65□□□□□ -0.7
HMGA1-203ENST00000374116 ATP5LO75964 103 aa10.65□□□□□ -0.7
HMGA1-203ENST00000374116 IGKCP01834 107 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms