RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 GAGE12GP0CL81 117 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 GAGE12IP0CL82 117 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 GAGE4Q13068 117 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 YAE1D1Q9NRH1 226 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 C11orf86A6NJI1 115 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 CRYGDP07320 174 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 COX6B1P14854 86 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 UBE2D1P51668 147 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 ZFAND2AQ8N6M9 145 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 ZNF688P0C7X2 276 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 ASIPP42127 132 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 Q6ZS46 218 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 TMEM219Q86XT9 240 aa10.36□□□□□ -0.75
USP49-201ENST00000373006 IGHV3-64A0A075B6Q5 118 aa10.35□□□□□ -0.75
USP49-201ENST00000373006 RPL39P62891 51 aaKnown RBP10.35□□□□□ -0.75
USP49-201ENST00000373006 MINOS1Q5TGZ0 78 aa10.35□□□□□ -0.75
USP49-201ENST00000373006 MINOS1-NBL1R4GNA1 71 aa10.35□□□□□ -0.75
USP49-201ENST00000373006 IGHV3OR16-10A0A075B7F0 116 aa10.35□□□□□ -0.75
USP49-201ENST00000373006 CD7P09564 240 aa10.35□□□□□ -0.75
USP49-201ENST00000373006 CRIP2P52943 208 aaPredicted RBP10.35□□□□□ -0.75
USP49-201ENST00000373006 TEN1Q86WV5 123 aa10.35□□□□□ -0.75
USP49-201ENST00000373006 JPT2Q9H910 190 aa10.35□□□□□ -0.75
USP49-201ENST00000373006 OOSP1A8MZH6 123 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 TSHBP01222 138 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 SAA4P35542 130 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 UNQ9165/PRO28630Q6UXU0 137 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 TP53TG1Q9Y2A0 90 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 TRAV21A0A0B4J279 112 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 NDUFA11Q86Y39 141 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 MRPL53Q96EL3 112 aaKnown RBP10.34□□□□□ -0.75
USP49-201ENST00000373006 C2CD3Q4AC94 2353 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 TRBV12-3P01733 135 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 TMEM170BQ5T4T1 132 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 GPHB5Q86YW7 130 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 OR10J6PQ8NGY7 276 aa10.34□□□□□ -0.75
USP49-201ENST00000373006 FAM208BQ5VWN6 2430 aa10.33□□□□□ -0.76
USP49-201ENST00000373006 A0A0J9YY99 117 aa10.33□□□□□ -0.76
USP49-201ENST00000373006 NDUFV3P56181 108 aaKnown RBP10.33□□□□□ -0.76
USP49-201ENST00000373006 U3KQE9 123 aa10.33□□□□□ -0.76
USP49-201ENST00000373006 TRBV7-1A0A0A6YYK4 115 aa10.33□□□□□ -0.76
USP49-201ENST00000373006 NHLRC4P0CG21 123 aaPredicted RBP10.33□□□□□ -0.76
USP49-201ENST00000373006 TSPEAR-AS2P59090 65 aa10.33□□□□□ -0.76
USP49-201ENST00000373006 MRPL23Q16540 153 aaKnown RBP10.33□□□□□ -0.76
USP49-201ENST00000373006 MEIG1Q5JSS6 88 aa10.33□□□□□ -0.76
USP49-201ENST00000373006 NTN5Q8WTR8 489 aaPredicted RBP10.33□□□□□ -0.76
USP49-201ENST00000373006 IGLV4-69A0A075B6H9 119 aa10.32□□□□□ -0.76
USP49-201ENST00000373006 UBE2D3P61077 147 aa10.32□□□□□ -0.76
USP49-201ENST00000373006 UBE2D2P62837 147 aa10.32□□□□□ -0.76
USP49-201ENST00000373006 LY6DQ14210 128 aa10.32□□□□□ -0.76
USP49-201ENST00000373006 ITLN2Q8WWU7 325 aaPredicted RBP10.32□□□□□ -0.76
USP49-201ENST00000373006 SIRPDQ9H106 197 aa10.32□□□□□ -0.76
USP49-201ENST00000373006 CFC1BP0CG36 223 aa10.32□□□□□ -0.76
USP49-201ENST00000373006 CFC1P0CG37 223 aa10.32□□□□□ -0.76
USP49-201ENST00000373006 RNASE3P12724 160 aaKnown RBP10.32□□□□□ -0.76
USP49-201ENST00000373006 A0A087WWL8 130 aa10.32□□□□□ -0.76
USP49-201ENST00000373006 SRD5A1P18405 259 aa10.32□□□□□ -0.76
USP49-201ENST00000373006 LINC00477Q96M19 166 aa10.32□□□□□ -0.76
USP49-201ENST00000373006 C9orf139Q6ZV77 190 aa10.31□□□□□ -0.76
USP49-201ENST00000373006 ATP6V0E2Q8NHE4 81 aa10.31□□□□□ -0.76
USP49-201ENST00000373006 MUC4Q99102 2169 aa10.31□□□□□ -0.76
USP49-201ENST00000373006 F5H697 171 aa10.31□□□□□ -0.76
USP49-201ENST00000373006 M0QXV9 152 aa10.31□□□□□ -0.76
USP49-201ENST00000373006 IFITM1P13164 125 aa10.31□□□□□ -0.76
USP49-201ENST00000373006 USP9YO00507 2555 aaPredicted RBP10.31□□□□□ -0.76
USP49-201ENST00000373006 CENPVL3A0A0U1RRI6 287 aa10.3□□□□□ -0.76
USP49-201ENST00000373006 K7ENP7 123 aa10.3□□□□□ -0.76
USP49-201ENST00000373006 PKD1L2Q7Z442 2459 aa10.3□□□□□ -0.76
USP49-201ENST00000373006 SLC25A20O43772 301 aa10.3□□□□□ -0.76
USP49-201ENST00000373006 IGHV3-11P01762 117 aa10.3□□□□□ -0.76
USP49-201ENST00000373006 CENPEQ02224 2701 aa10.3□□□□□ -0.76
USP49-201ENST00000373006 TEX49A0A1B0GTD5 131 aa10.3□□□□□ -0.76
USP49-201ENST00000373006 ZNRF2Q8NHG8 242 aa10.3□□□□□ -0.76
USP49-201ENST00000373006 OPRPNQ99935 248 aaPredicted RBP10.3□□□□□ -0.76
USP49-201ENST00000373006 PPDPFQ9H3Y8 114 aa10.3□□□□□ -0.76
USP49-201ENST00000373006 IGHV3-30P01768 117 aa10.29□□□□□ -0.76
USP49-201ENST00000373006 IGHV3-30-5P0DP03 117 aa10.29□□□□□ -0.76
USP49-201ENST00000373006 UBE2E1P51965 193 aa10.29□□□□□ -0.76
USP49-201ENST00000373006 HERVK_113P61574 105 aa10.29□□□□□ -0.76
USP49-201ENST00000373006 CHCHD5Q9BSY4 110 aa10.29□□□□□ -0.76
USP49-201ENST00000373006 LENEPQ9Y5L5 61 aa10.29□□□□□ -0.76
USP49-201ENST00000373006 IGIPA6NJ69 53 aa10.29□□□□□ -0.76
USP49-201ENST00000373006 PMVKQ15126 192 aa10.29□□□□□ -0.76
USP49-201ENST00000373006 C11orf71Q6IPW1 123 aa10.29□□□□□ -0.76
USP49-201ENST00000373006 A0A1W2PPR1 153 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 NPC2P61916 151 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 FAM74A4Q5TZK3 123 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 C15orf53Q8NAA6 179 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 TRAV41A0A0B4J266 112 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 ADORA2A-AS1P86434 159 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 UBTD1Q9HAC8 227 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 ZNF256Q9Y2P7 627 aaPredicted RBP10.28□□□□□ -0.76
USP49-201ENST00000373006 LINC00315P59091 139 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 CRYBG3Q68DQ2 2970 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 C10orf126Q8N4M7 172 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 C5orf56Q8N8D9 126 aa10.28□□□□□ -0.76
USP49-201ENST00000373006 OVOL1O14753 267 aa10.27□□□□□ -0.77
USP49-201ENST00000373006 SUMO4Q6EEV6 95 aa10.27□□□□□ -0.77
USP49-201ENST00000373006 MYO18BQ8IUG5 2567 aa10.27□□□□□ -0.77
USP49-201ENST00000373006 TRAV2A0A0B4J234 112 aa10.27□□□□□ -0.77
USP49-201ENST00000373006 SLC25A29Q8N8R3 303 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms