RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 NDUFA11Q86Y39 141 aa12.27□□□□□ -0.44
SDC4-201ENST00000372733 SPTAN1Q13813 2472 aaKnown RBP12.27□□□□□ -0.45
SDC4-201ENST00000372733 F5H697 171 aa12.27□□□□□ -0.45
SDC4-201ENST00000372733 POLR2KP53803 58 aaKnown RBP12.27□□□□□ -0.45
SDC4-201ENST00000372733 FHL3Q13643 280 aa12.27□□□□□ -0.45
SDC4-201ENST00000372733 IGHV4OR15-8A0A075B7B6 117 aa12.26□□□□□ -0.45
SDC4-201ENST00000372733 A0A087WW49 117 aa12.26□□□□□ -0.45
SDC4-201ENST00000372733 PF4V1P10720 104 aa12.26□□□□□ -0.45
SDC4-201ENST00000372733 A0A1B0GV72 72 aa12.26□□□□□ -0.45
SDC4-201ENST00000372733 ATP6V0E2Q8NHE4 81 aa12.26□□□□□ -0.45
SDC4-201ENST00000372733 ZNRF2Q8NHG8 242 aa12.26□□□□□ -0.45
SDC4-201ENST00000372733 CDIP1Q9H305 208 aa12.26□□□□□ -0.45
SDC4-201ENST00000372733 HIVEP3Q5T1R4 2406 aa12.26□□□□□ -0.45
SDC4-201ENST00000372733 SDHAF1A6NFY7 115 aa12.25□□□□□ -0.45
SDC4-201ENST00000372733 FAM159AQ6UWV7 190 aa12.25□□□□□ -0.45
SDC4-201ENST00000372733 KLLNB2CW77 178 aa12.25□□□□□ -0.45
SDC4-201ENST00000372733 TCL1BO95988 128 aa12.25□□□□□ -0.45
SDC4-201ENST00000372733 FAM74A4Q5TZK3 123 aa12.25□□□□□ -0.45
SDC4-201ENST00000372733 KIR2DL4Q99706 377 aa12.25□□□□□ -0.45
SDC4-201ENST00000372733 TRAV12-3A0A0B4J271 114 aa12.24□□□□□ -0.45
SDC4-201ENST00000372733 IGHV1-69P01742 117 aa12.24□□□□□ -0.45
SDC4-201ENST00000372733 IGHV3-30P01768 117 aa12.24□□□□□ -0.45
SDC4-201ENST00000372733 IGHV3-30-5P0DP03 117 aa12.24□□□□□ -0.45
SDC4-201ENST00000372733 RPL32P62910 135 aaKnown RBP12.24□□□□□ -0.45
SDC4-201ENST00000372733 PAPPA-AS1Q5QFB9 102 aa12.24□□□□□ -0.45
SDC4-201ENST00000372733 CFC1BP0CG36 223 aa12.24□□□□□ -0.45
SDC4-201ENST00000372733 CFC1P0CG37 223 aa12.24□□□□□ -0.45
SDC4-201ENST00000372733 VCYO14598 125 aa12.24□□□□□ -0.45
SDC4-201ENST00000372733 TMEM141Q96I45 108 aa12.24□□□□□ -0.45
SDC4-201ENST00000372733 ZNF256Q9Y2P7 627 aaPredicted RBP12.24□□□□□ -0.45
SDC4-201ENST00000372733 TRBV7-9A0A0J9YWB2 115 aa12.23□□□□□ -0.45
SDC4-201ENST00000372733 CARD19Q96LW7 228 aa12.23□□□□□ -0.45
SDC4-201ENST00000372733 AMELXQ99217 191 aa12.23□□□□□ -0.45
SDC4-201ENST00000372733 TIMM17AQ99595 171 aa12.23□□□□□ -0.45
SDC4-201ENST00000372733 OPRPNQ99935 248 aaPredicted RBP12.23□□□□□ -0.45
SDC4-201ENST00000372733 VPS13CQ709C8 3753 aa12.23□□□□□ -0.45
SDC4-201ENST00000372733 USMG5Q96IX5 58 aa12.23□□□□□ -0.45
SDC4-201ENST00000372733 CKS1BP61024 79 aa12.22□□□□□ -0.45
SDC4-201ENST00000372733 ZNF876PQ49A33 203 aa12.22□□□□□ -0.45
SDC4-201ENST00000372733 LYRM7Q5U5X0 104 aa12.22□□□□□ -0.45
SDC4-201ENST00000372733 SLC25A29Q8N8R3 303 aa12.22□□□□□ -0.45
SDC4-201ENST00000372733 COL12A1Q99715 3063 aa12.22□□□□□ -0.45
SDC4-201ENST00000372733 J3QQQ9 107 aa12.22□□□□□ -0.45
SDC4-201ENST00000372733 IGHV4-38-2P0DP08 117 aa12.22□□□□□ -0.45
SDC4-201ENST00000372733 BLCAPP62952 87 aa12.22□□□□□ -0.45
SDC4-201ENST00000372733 DAZ1Q9NQZ3 744 aaKnown RBP12.22□□□□□ -0.45
SDC4-201ENST00000372733 H3BUX3 64 aa12.21□□□□□ -0.45
SDC4-201ENST00000372733 MT-ATP8P03928 68 aa12.21□□□□□ -0.45
SDC4-201ENST00000372733 C10orf126Q8N4M7 172 aa12.21□□□□□ -0.45
SDC4-201ENST00000372733 IGHG2P01859 326 aa12.21□□□□□ -0.46
SDC4-201ENST00000372733 TCTEX1D4Q5JR98 221 aa12.21□□□□□ -0.46
SDC4-201ENST00000372733 TEN1Q86WV5 123 aa12.21□□□□□ -0.46
SDC4-201ENST00000372733 TRBV27A0A0K0K1C4 114 aa12.2□□□□□ -0.46
SDC4-201ENST00000372733 IGKV3-20P01619 116 aa12.2□□□□□ -0.46
SDC4-201ENST00000372733 PPDPFLQ8WWR9 84 aa12.2□□□□□ -0.46
SDC4-201ENST00000372733 IGHV4-39P01824 125 aa12.2□□□□□ -0.46
SDC4-201ENST00000372733 LGALS3P17931 250 aaKnown RBP12.2□□□□□ -0.46
SDC4-201ENST00000372733 XGP55808 180 aa12.2□□□□□ -0.46
SDC4-201ENST00000372733 ZNF56Q15929 161 aa12.2□□□□□ -0.46
SDC4-201ENST00000372733 IGHV3-64A0A075B6Q5 118 aa12.19□□□□□ -0.46
SDC4-201ENST00000372733 TRAV12-2A0A075B6T6 113 aa12.19□□□□□ -0.46
SDC4-201ENST00000372733 LGALS9O00182 355 aa12.19□□□□□ -0.46
SDC4-201ENST00000372733 SPINK8P0C7L1 97 aa12.19□□□□□ -0.46
SDC4-201ENST00000372733 MDFICQ9P1T7 246 aa12.19□□□□□ -0.46
SDC4-201ENST00000372733 DCANP1Q8TF63 244 aa12.19□□□□□ -0.46
SDC4-201ENST00000372733 H3BUA1 57 aa12.18□□□□□ -0.46
SDC4-201ENST00000372733 EIF4EBP3O60516 100 aaPredicted RBP12.18□□□□□ -0.46
SDC4-201ENST00000372733 SCGB1C2P0DMR2 95 aa12.18□□□□□ -0.46
SDC4-201ENST00000372733 PRO1854Q9UHT4 67 aa12.18□□□□□ -0.46
SDC4-201ENST00000372733 IGHV4-61A0A0C4DH41 118 aa12.18□□□□□ -0.46
SDC4-201ENST00000372733 ZNF688P0C7X2 276 aa12.18□□□□□ -0.46
SDC4-201ENST00000372733 Q6ZUT4 128 aa12.18□□□□□ -0.46
SDC4-201ENST00000372733 ANKRD29Q8N6D5 301 aa12.18□□□□□ -0.46
SDC4-201ENST00000372733 IGHV3-16A0A0C4DH30 117 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 TRBV6-5A0A0K0K1A5 114 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 A8MWV9 139 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 CRYBA4P53673 196 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 RAX2Q96IS3 184 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 TRBV20-1A0A075B6N2 111 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 A4D1N5 150 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 A6NDX4 124 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 C19orf84I3L1E1 186 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 TMEM95Q3KNT9 176 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 C9orf85Q96MD7 179 aa12.17□□□□□ -0.46
SDC4-201ENST00000372733 M0QY20 66 aa12.16□□□□□ -0.46
SDC4-201ENST00000372733 ID1P41134 155 aa12.16□□□□□ -0.46
SDC4-201ENST00000372733 H7C2G1 150 aa12.16□□□□□ -0.46
SDC4-201ENST00000372733 SBSPONQ8IVN8 264 aa12.16□□□□□ -0.46
SDC4-201ENST00000372733 TRAV2A0A0B4J234 112 aa12.15□□□□□ -0.46
SDC4-201ENST00000372733 BRI3O95415 125 aa12.15□□□□□ -0.46
SDC4-201ENST00000372733 IGLV1-40P01703 118 aa12.15□□□□□ -0.46
SDC4-201ENST00000372733 ZNF580Q9UK33 172 aa12.15□□□□□ -0.46
SDC4-201ENST00000372733 TMEM223A0PJW6 202 aa12.15□□□□□ -0.46
SDC4-201ENST00000372733 P0DMU3 169 aa12.15□□□□□ -0.46
SDC4-201ENST00000372733 FAM231AP0DMU4 169 aa12.15□□□□□ -0.46
SDC4-201ENST00000372733 FAM231CP0DMU5 169 aa12.15□□□□□ -0.46
SDC4-201ENST00000372733 Q8N1Y9 231 aa12.15□□□□□ -0.46
SDC4-201ENST00000372733 NSUN5P1Q3KNT7 163 aa12.14□□□□□ -0.47
SDC4-201ENST00000372733 CLUHP3Q96NS8 147 aa12.14□□□□□ -0.47
SDC4-201ENST00000372733 GEMIN7Q9H840 131 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms