RNA–Protein interactions for RNA: ENST00000355155.5

VPS13B-201, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 1 (best) BASIC

Gene VPS13B, Length 2,822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-201ENST00000355155 ZNF664Q8N3J9 261 aa12.53□□□□□ -0.4
VPS13B-201ENST00000355155 SMIM2Q9BVW6 85 aa12.53□□□□□ -0.4
VPS13B-201ENST00000355155 TIMM8BQ9Y5J9 83 aaPredicted RBP12.53□□□□□ -0.4
VPS13B-201ENST00000355155 FN1P02751 2386 aaKnown RBP12.53□□□□□ -0.4
VPS13B-201ENST00000355155 SYS1-DBNDD2H3BUS1 97 aa12.53□□□□□ -0.4
VPS13B-201ENST00000355155 M0R2P5 195 aa12.53□□□□□ -0.4
VPS13B-201ENST00000355155 HIVEP1P15822 2718 aa12.52□□□□□ -0.4
VPS13B-201ENST00000355155 MCRIP2Q9BUT9 160 aaKnown RBP12.52□□□□□ -0.4
VPS13B-201ENST00000355155 LOC389332A0A1B0GUA5 103 aa12.52□□□□□ -0.41
VPS13B-201ENST00000355155 SMIM17P0DL12 118 aa12.52□□□□□ -0.41
VPS13B-201ENST00000355155 SUMO2P61956 95 aaKnown RBP12.52□□□□□ -0.41
VPS13B-201ENST00000355155 LINC01545Q5VT33 79 aa12.51□□□□□ -0.41
VPS13B-201ENST00000355155 CSNK1G2-AS1Q8NCQ2 148 aa12.51□□□□□ -0.41
VPS13B-201ENST00000355155 TRAV26-2A0A0B4J265 109 aa12.51□□□□□ -0.41
VPS13B-201ENST00000355155 C20orf202A1L168 122 aa12.51□□□□□ -0.41
VPS13B-201ENST00000355155 MAP1LC3CQ9BXW4 147 aa12.51□□□□□ -0.41
VPS13B-201ENST00000355155 A8MWV9 139 aa12.5□□□□□ -0.41
VPS13B-201ENST00000355155 SPRY2O43597 315 aa12.5□□□□□ -0.41
VPS13B-201ENST00000355155 POLR2KP53803 58 aaKnown RBP12.5□□□□□ -0.41
VPS13B-201ENST00000355155 SUMO4Q6EEV6 95 aa12.5□□□□□ -0.41
VPS13B-201ENST00000355155 LINC00173Q6ZV60 143 aa12.5□□□□□ -0.41
VPS13B-201ENST00000355155 C1QTNF4Q9BXJ3 329 aa12.5□□□□□ -0.41
VPS13B-201ENST00000355155 NF1P21359 2839 aa12.49□□□□□ -0.41
VPS13B-201ENST00000355155 LAGE3Q14657 143 aa12.49□□□□□ -0.41
VPS13B-201ENST00000355155 RNASE8Q8TDE3 154 aaKnown RBP12.49□□□□□ -0.41
VPS13B-201ENST00000355155 LINC01587Q99440 93 aa12.49□□□□□ -0.41
VPS13B-201ENST00000355155 LINC01549A6NIU2 74 aa12.48□□□□□ -0.41
VPS13B-201ENST00000355155 TSTD3H0UI37 97 aa12.48□□□□□ -0.41
VPS13B-201ENST00000355155 M0QY20 66 aa12.48□□□□□ -0.41
VPS13B-201ENST00000355155 ZNF876PQ49A33 203 aa12.48□□□□□ -0.41
VPS13B-201ENST00000355155 JPT2Q9H910 190 aa12.48□□□□□ -0.41
VPS13B-201ENST00000355155 ORMDL2Q53FV1 153 aa12.48□□□□□ -0.41
VPS13B-201ENST00000355155 RS1O15537 224 aa12.47□□□□□ -0.41
VPS13B-201ENST00000355155 ZNF705AQ6ZN79 300 aaPredicted RBP12.47□□□□□ -0.41
VPS13B-201ENST00000355155 LGALS9BQ3B8N2 356 aa12.47□□□□□ -0.41
VPS13B-201ENST00000355155 LGALS9CQ6DKI2 356 aa12.47□□□□□ -0.41
VPS13B-201ENST00000355155 MGPP08493 103 aa12.47□□□□□ -0.41
VPS13B-201ENST00000355155 ZFP2Q6ZN57 461 aa12.47□□□□□ -0.41
VPS13B-201ENST00000355155 TMEM263Q8WUH6 116 aaKnown RBP12.47□□□□□ -0.41
VPS13B-201ENST00000355155 RPL39LQ96EH5 51 aaKnown RBP12.47□□□□□ -0.41
VPS13B-201ENST00000355155 TRBV27A0A0K0K1C4 114 aa12.46□□□□□ -0.41
VPS13B-201ENST00000355155 GOLT1BQ9Y3E0 138 aa12.46□□□□□ -0.41
VPS13B-201ENST00000355155 RHODO00212 210 aa12.46□□□□□ -0.42
VPS13B-201ENST00000355155 DAZ2Q13117 558 aaKnown RBP12.46□□□□□ -0.42
VPS13B-201ENST00000355155 XCL2Q9UBD3 114 aa12.46□□□□□ -0.42
VPS13B-201ENST00000355155 VAMP8Q9BV40 100 aa12.45□□□□□ -0.42
VPS13B-201ENST00000355155 ST20Q9HBF5 79 aa12.45□□□□□ -0.42
VPS13B-201ENST00000355155 MTORP42345 2549 aa12.45□□□□□ -0.42
VPS13B-201ENST00000355155 TCAPO15273 167 aa12.45□□□□□ -0.42
VPS13B-201ENST00000355155 SETXQ7Z333 2677 aaKnown RBP12.45□□□□□ -0.42
VPS13B-201ENST00000355155 G0S2P27469 103 aa12.44□□□□□ -0.42
VPS13B-201ENST00000355155 TOMM6Q96B49 74 aa12.44□□□□□ -0.42
VPS13B-201ENST00000355155 TRAV9-2A0A087WT02 112 aa12.44□□□□□ -0.42
VPS13B-201ENST00000355155 IFI27L1Q96BM0 104 aa12.44□□□□□ -0.42
VPS13B-201ENST00000355155 OVOL2Q9BRP0 275 aa12.44□□□□□ -0.42
VPS13B-201ENST00000355155 A0A087WWL8 130 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 PCP4L1A6NKN8 68 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 VCYO14598 125 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 ATP5LO75964 103 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 RIPPLY3P57055 190 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 CFAP126Q5VTH2 177 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 SPATA3Q8NHX4 192 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 TMEM158Q8WZ71 300 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 PLAC8L1A1L4L8 177 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 H7C1H1 209 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 CIDEAO60543 219 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 C16orf74Q96GX8 76 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 KRTAP24-1Q3LI83 254 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 ZMAT4Q9H898 229 aa12.43□□□□□ -0.42
VPS13B-201ENST00000355155 LINC00587B1AMM8 73 aa12.42□□□□□ -0.42
VPS13B-201ENST00000355155 AZU1P20160 251 aa12.42□□□□□ -0.42
VPS13B-201ENST00000355155 DDTP30046 118 aa12.42□□□□□ -0.42
VPS13B-201ENST00000355155 GTSCR1Q86UQ5 136 aa12.42□□□□□ -0.42
VPS13B-201ENST00000355155 WFDC10AQ9H1F0 79 aa12.42□□□□□ -0.42
VPS13B-201ENST00000355155 DNAJC30Q96LL9 226 aa12.42□□□□□ -0.42
VPS13B-201ENST00000355155 CSTL1Q9H114 145 aa12.41□□□□□ -0.42
VPS13B-201ENST00000355155 RHOHQ15669 191 aa12.41□□□□□ -0.42
VPS13B-201ENST00000355155 IGHV3-53P01767 116 aa12.4□□□□□ -0.42
VPS13B-201ENST00000355155 MRPL52Q86TS9 123 aaKnown RBP12.4□□□□□ -0.42
VPS13B-201ENST00000355155 KIR2DL5BQ8NHK3 375 aa12.4□□□□□ -0.42
VPS13B-201ENST00000355155 NACAE9PAV3 2078 aa12.39□□□□□ -0.43
VPS13B-201ENST00000355155 TRAV12-1A0A0B4J245 112 aa12.39□□□□□ -0.43
VPS13B-201ENST00000355155 CYSRT1A8MQ03 144 aa12.39□□□□□ -0.43
VPS13B-201ENST00000355155 ZNF56Q15929 161 aa12.39□□□□□ -0.43
VPS13B-201ENST00000355155 PRO1933Q9H354 126 aa12.39□□□□□ -0.43
VPS13B-201ENST00000355155 C18orf15Q96N68 181 aa12.38□□□□□ -0.43
VPS13B-201ENST00000355155 MIEN1Q9BRT3 115 aa12.38□□□□□ -0.43
VPS13B-201ENST00000355155 SDHAF1A6NFY7 115 aa12.38□□□□□ -0.43
VPS13B-201ENST00000355155 PRM2P04554 102 aa12.38□□□□□ -0.43
VPS13B-201ENST00000355155 SPATA45Q537H7 98 aa12.38□□□□□ -0.43
VPS13B-201ENST00000355155 TMEM208Q9BTX3 173 aa12.38□□□□□ -0.43
VPS13B-201ENST00000355155 TRAV4A0A0B4J268 109 aa12.38□□□□□ -0.43
VPS13B-201ENST00000355155 SMIM9A6NGZ8 99 aa12.38□□□□□ -0.43
VPS13B-201ENST00000355155 LINC00612Q8N6U2 182 aa12.38□□□□□ -0.43
VPS13B-201ENST00000355155 F5H697 171 aa12.37□□□□□ -0.43
VPS13B-201ENST00000355155 NUDT3O95989 172 aa12.37□□□□□ -0.43
VPS13B-201ENST00000355155 FAM74A4Q5TZK3 123 aa12.37□□□□□ -0.43
VPS13B-201ENST00000355155 SHISA2Q6UWI4 295 aa12.37□□□□□ -0.43
VPS13B-201ENST00000355155 PAM16Q9Y3D7 125 aa12.37□□□□□ -0.43
VPS13B-201ENST00000355155 C2CD3Q4AC94 2353 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms