RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 SMR3AQ99954 134 aa10.46□□□□□ -0.73
TRIM4-201ENST00000349062 IGHV3OR16-12A0A075B7B8 117 aa10.46□□□□□ -0.74
TRIM4-201ENST00000349062 ID1P41134 155 aa10.46□□□□□ -0.74
TRIM4-201ENST00000349062 ASIPP42127 132 aa10.46□□□□□ -0.74
TRIM4-201ENST00000349062 SCGB2A2Q13296 93 aa10.46□□□□□ -0.74
TRIM4-201ENST00000349062 TCTEX1D4Q5JR98 221 aa10.46□□□□□ -0.74
TRIM4-201ENST00000349062 IGHV3-73A0A0B4J1V6 119 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 TRAV21A0A0B4J279 112 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 OR5A1Q8NGJ0 315 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 TMEM158Q8WZ71 300 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 RPL39LQ96EH5 51 aaKnown RBP10.45□□□□□ -0.74
TRIM4-201ENST00000349062 HIST1H4GQ99525 98 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 NBEAL2Q6ZNJ1 2754 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 LINC01559Q495D7 138 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 RNF185Q96GF1 192 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 ZNF702PQ9H963 129 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.45□□□□□ -0.74
TRIM4-201ENST00000349062 OVOL1O14753 267 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 Q6YL49 198 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 SIGMAR1Q99720 223 aa10.45□□□□□ -0.74
TRIM4-201ENST00000349062 A0A1B0GW15 77 aa10.44□□□□□ -0.74
TRIM4-201ENST00000349062 CIDEAO60543 219 aa10.44□□□□□ -0.74
TRIM4-201ENST00000349062 SNRPD3P62318 126 aaKnown RBP10.43□□□□□ -0.74
TRIM4-201ENST00000349062 TEP1Q99973 2627 aaKnown RBP10.43□□□□□ -0.74
TRIM4-201ENST00000349062 TRBV25-1A0A075B6N4 114 aa10.43□□□□□ -0.74
TRIM4-201ENST00000349062 RBAKDNA6NC62 111 aa10.43□□□□□ -0.74
TRIM4-201ENST00000349062 IGKCP01834 107 aa10.43□□□□□ -0.74
TRIM4-201ENST00000349062 DEFB131AP59861 70 aa10.43□□□□□ -0.74
TRIM4-201ENST00000349062 J3QLI3 93 aa10.43□□□□□ -0.74
TRIM4-201ENST00000349062 APRG1Q8IVJ8 170 aa10.43□□□□□ -0.74
TRIM4-201ENST00000349062 DYNLRB2Q8TF09 96 aa10.43□□□□□ -0.74
TRIM4-201ENST00000349062 ZNF479Q96JC4 524 aa10.43□□□□□ -0.74
TRIM4-201ENST00000349062 ATRQ13535 2644 aa10.43□□□□□ -0.74
TRIM4-201ENST00000349062 ZNF493Q6ZR52 646 aa10.42□□□□□ -0.74
TRIM4-201ENST00000349062 MUC4Q99102 2169 aa10.42□□□□□ -0.74
TRIM4-201ENST00000349062 SMIM17P0DL12 118 aa10.42□□□□□ -0.74
TRIM4-201ENST00000349062 H3BUA1 57 aa10.42□□□□□ -0.74
TRIM4-201ENST00000349062 CRIP2P52943 208 aaPredicted RBP10.42□□□□□ -0.74
TRIM4-201ENST00000349062 CFHR3Q02985 330 aa10.42□□□□□ -0.74
TRIM4-201ENST00000349062 MRPL35Q9NZE8 188 aaKnown RBP10.42□□□□□ -0.74
TRIM4-201ENST00000349062 SOCS3O14543 225 aa10.41□□□□□ -0.74
TRIM4-201ENST00000349062 A0A1B0GWB2 263 aa10.41□□□□□ -0.74
TRIM4-201ENST00000349062 LGALS1P09382 135 aaKnown RBP10.41□□□□□ -0.74
TRIM4-201ENST00000349062 MDFICQ9P1T7 246 aa10.41□□□□□ -0.74
TRIM4-201ENST00000349062 GAGE12HA6NDE8 117 aa10.4□□□□□ -0.74
TRIM4-201ENST00000349062 J3QR89 54 aa10.4□□□□□ -0.74
TRIM4-201ENST00000349062 EMP1P54849 157 aa10.4□□□□□ -0.74
TRIM4-201ENST00000349062 MYOZ3Q8TDC0 251 aa10.4□□□□□ -0.74
TRIM4-201ENST00000349062 DCANP1Q8TF63 244 aa10.4□□□□□ -0.74
TRIM4-201ENST00000349062 CYSLTR1Q9Y271 337 aa10.4□□□□□ -0.74
TRIM4-201ENST00000349062 LOC107984156A0A0G2JMH3 177 aa10.4□□□□□ -0.74
TRIM4-201ENST00000349062 INSL3P51460 131 aa10.4□□□□□ -0.74
TRIM4-201ENST00000349062 ARL17AQ8IVW1 177 aa10.4□□□□□ -0.74
TRIM4-201ENST00000349062 MAPKAPK5-AS1Q8N8E1 139 aa10.4□□□□□ -0.75
TRIM4-201ENST00000349062 ZNF256Q9Y2P7 627 aaPredicted RBP10.4□□□□□ -0.75
TRIM4-201ENST00000349062 DPM2O94777 84 aa10.39□□□□□ -0.75
TRIM4-201ENST00000349062 J3QKU1 62 aa10.39□□□□□ -0.75
TRIM4-201ENST00000349062 ODF1Q14990 250 aa10.39□□□□□ -0.75
TRIM4-201ENST00000349062 DLX4Q92988 240 aaPredicted RBP10.39□□□□□ -0.75
TRIM4-201ENST00000349062 ZNF418Q8TF45 676 aaPredicted RBP10.39□□□□□ -0.75
TRIM4-201ENST00000349062 ZNF56Q15929 161 aa10.38□□□□□ -0.75
TRIM4-201ENST00000349062 TMEM61Q8N0U2 210 aa10.38□□□□□ -0.75
TRIM4-201ENST00000349062 CLUHP3Q96NS8 147 aa10.38□□□□□ -0.75
TRIM4-201ENST00000349062 DNAJC9-AS1A6NH13 148 aa10.37□□□□□ -0.75
TRIM4-201ENST00000349062 CEND1Q8N111 149 aa10.37□□□□□ -0.75
TRIM4-201ENST00000349062 MRPL53Q96EL3 112 aaKnown RBP10.37□□□□□ -0.75
TRIM4-201ENST00000349062 SIVA1O15304 175 aa10.37□□□□□ -0.75
TRIM4-201ENST00000349062 NSUN5P1Q3KNT7 163 aa10.37□□□□□ -0.75
TRIM4-201ENST00000349062 GAGE13Q4V321 117 aa10.37□□□□□ -0.75
TRIM4-201ENST00000349062 SCGB1D4Q6XE38 83 aa10.37□□□□□ -0.75
TRIM4-201ENST00000349062 UBE2E2Q96LR5 201 aa10.37□□□□□ -0.75
TRIM4-201ENST00000349062 HHLA3Q9XRX5 114 aa10.37□□□□□ -0.75
TRIM4-201ENST00000349062 IGLL5B9A064 214 aa10.36□□□□□ -0.75
TRIM4-201ENST00000349062 ELANEP08246 267 aa10.36□□□□□ -0.75
TRIM4-201ENST00000349062 RNASE3P12724 160 aaKnown RBP10.36□□□□□ -0.75
TRIM4-201ENST00000349062 CD300EQ496F6 205 aaPredicted RBP10.36□□□□□ -0.75
TRIM4-201ENST00000349062 SPAG8Q99932 426 aaPredicted RBP10.36□□□□□ -0.75
TRIM4-201ENST00000349062 C12orf74Q32Q52 190 aa10.36□□□□□ -0.75
TRIM4-201ENST00000349062 Q6ZSV7 163 aa10.36□□□□□ -0.75
TRIM4-201ENST00000349062 KRTAP1-3Q8IUG1 177 aa10.36□□□□□ -0.75
TRIM4-201ENST00000349062 Q8N1Y9 231 aa10.36□□□□□ -0.75
TRIM4-201ENST00000349062 ESM1Q9NQ30 184 aa10.36□□□□□ -0.75
TRIM4-201ENST00000349062 PDZD2O15018 2839 aa10.36□□□□□ -0.75
TRIM4-201ENST00000349062 APOMO95445 188 aa10.35□□□□□ -0.75
TRIM4-201ENST00000349062 SRSF9Q13242 221 aaKnown RBP eCLIP10.35□□□□□ -0.75
TRIM4-201ENST00000349062 OTOGQ6ZRI0 2925 aa10.35□□□□□ -0.75
TRIM4-201ENST00000349062 COX8CQ7Z4L0 72 aa10.35□□□□□ -0.75
TRIM4-201ENST00000349062 CD28P10747 220 aa10.35□□□□□ -0.75
TRIM4-201ENST00000349062 KLK9Q2XQG4 91 aa10.35□□□□□ -0.75
TRIM4-201ENST00000349062 GATD1Q8NB37 220 aa10.35□□□□□ -0.75
TRIM4-201ENST00000349062 LINC01619G3V211 115 aa10.34□□□□□ -0.75
TRIM4-201ENST00000349062 CKS1BP61024 79 aa10.34□□□□□ -0.75
TRIM4-201ENST00000349062 NXT2Q9NPJ8 142 aaKnown RBP10.34□□□□□ -0.75
TRIM4-201ENST00000349062 MRPL16Q9NX20 251 aaKnown RBP10.34□□□□□ -0.75
TRIM4-201ENST00000349062 XCL2Q9UBD3 114 aa10.34□□□□□ -0.75
TRIM4-201ENST00000349062 U3KQK5 164 aa10.34□□□□□ -0.75
TRIM4-201ENST00000349062 A0A0J9YX75 114 aa10.34□□□□□ -0.75
TRIM4-201ENST00000349062 FOXI2Q6ZQN5 318 aa10.34□□□□□ -0.75
TRIM4-201ENST00000349062 C20orf78Q9BR46 151 aa10.34□□□□□ -0.75
TRIM4-201ENST00000349062 DPH3P1Q9H4G8 78 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms