RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 LINC00315P59091 139 aa13.46□□□□□ -0.25
CHMP4A-201ENST00000347519 UFSP1Q6NVU6 142 aa13.46□□□□□ -0.25
CHMP4A-201ENST00000347519 GATD1Q8NB37 220 aa13.46□□□□□ -0.25
CHMP4A-201ENST00000347519 ZNF479Q96JC4 524 aa13.46□□□□□ -0.25
CHMP4A-201ENST00000347519 TRGV2A0A075B6R0 118 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 IGHV3-73A0A0B4J1V6 119 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 TMEM136Q6ZRR5 245 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 FAM210BQ96KR6 192 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 AP1S3Q96PC3 154 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 TRAV4A0A0B4J268 109 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 A0A1B0GW15 77 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 A8MWV9 139 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 TRGC1P0CF51 173 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 NANOS2P60321 138 aaKnown RBP13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 DAD1P61803 113 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 NDUFAF3Q9BU61 184 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 TMEM191AQ9H0A3 160 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 U3KQK5 164 aa13.45□□□□□ -0.26
CHMP4A-201ENST00000347519 FAM74A4Q5TZK3 123 aa13.44□□□□□ -0.26
CHMP4A-201ENST00000347519 Q6ZSN1 163 aa13.44□□□□□ -0.26
CHMP4A-201ENST00000347519 AMN1Q8IY45 258 aa13.44□□□□□ -0.26
CHMP4A-201ENST00000347519 OR4C5Q8NGB2 326 aa13.44□□□□□ -0.26
CHMP4A-201ENST00000347519 RNF185Q96GF1 192 aa13.44□□□□□ -0.26
CHMP4A-201ENST00000347519 C18orf15Q96N68 181 aa13.44□□□□□ -0.26
CHMP4A-201ENST00000347519 EDA2RQ9HAV5 297 aa13.44□□□□□ -0.26
CHMP4A-201ENST00000347519 C11orf45Q8TAV5 145 aa13.43□□□□□ -0.26
CHMP4A-201ENST00000347519 HOXA5P20719 270 aa13.42□□□□□ -0.26
CHMP4A-201ENST00000347519 RAB4BP61018 213 aa13.42□□□□□ -0.26
CHMP4A-201ENST00000347519 RASL11AQ6T310 242 aa13.42□□□□□ -0.26
CHMP4A-201ENST00000347519 DPH3P1Q9H4G8 78 aa13.42□□□□□ -0.26
CHMP4A-201ENST00000347519 TEX48A0A1B0GUV7 120 aa13.41□□□□□ -0.26
CHMP4A-201ENST00000347519 MGPP08493 103 aa13.41□□□□□ -0.26
CHMP4A-201ENST00000347519 FAM104BQ5XKR9 115 aa13.41□□□□□ -0.26
CHMP4A-201ENST00000347519 Q6ZTC4 211 aa13.41□□□□□ -0.26
CHMP4A-201ENST00000347519 GAS8-AS1O95177 125 aa13.4□□□□□ -0.26
CHMP4A-201ENST00000347519 S100A8P05109 93 aa13.4□□□□□ -0.26
CHMP4A-201ENST00000347519 SMIM17P0DL12 118 aa13.4□□□□□ -0.26
CHMP4A-201ENST00000347519 RAB4AP20338 218 aa13.4□□□□□ -0.26
CHMP4A-201ENST00000347519 SLAQ13239 276 aa13.4□□□□□ -0.26
CHMP4A-201ENST00000347519 FHL2Q14192 279 aa13.4□□□□□ -0.26
CHMP4A-201ENST00000347519 SMIM15Q7Z3B0 74 aa13.4□□□□□ -0.26
CHMP4A-201ENST00000347519 GNB1LQ9BYB4 327 aa13.4□□□□□ -0.26
CHMP4A-201ENST00000347519 MRPL51Q4U2R6 128 aaKnown RBP13.39□□□□□ -0.27
CHMP4A-201ENST00000347519 STAB2Q8WWQ8 2551 aa13.38□□□□□ -0.27
CHMP4A-201ENST00000347519 DNAH7Q8WXX0 4024 aa13.38□□□□□ -0.27
CHMP4A-201ENST00000347519 DYNC2H1Q8NCM8 4307 aaKnown RBP13.38□□□□□ -0.27
CHMP4A-201ENST00000347519 TRAV26-2A0A0B4J265 109 aa13.38□□□□□ -0.27
CHMP4A-201ENST00000347519 HTN3P15516 51 aa13.38□□□□□ -0.27
CHMP4A-201ENST00000347519 RAB5AP20339 215 aa13.38□□□□□ -0.27
CHMP4A-201ENST00000347519 SUMO4Q6EEV6 95 aa13.38□□□□□ -0.27
CHMP4A-201ENST00000347519 ZFP2Q6ZN57 461 aa13.38□□□□□ -0.27
CHMP4A-201ENST00000347519 Q9UF83 564 aa13.38□□□□□ -0.27
CHMP4A-201ENST00000347519 SMKR1H3BMG3 65 aa13.37□□□□□ -0.27
CHMP4A-201ENST00000347519 RHODO00212 210 aa13.37□□□□□ -0.27
CHMP4A-201ENST00000347519 ATP5G1P05496 136 aa13.37□□□□□ -0.27
CHMP4A-201ENST00000347519 ZNF56Q15929 161 aa13.37□□□□□ -0.27
CHMP4A-201ENST00000347519 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.37□□□□□ -0.27
CHMP4A-201ENST00000347519 MRPL18Q9H0U6 180 aaKnown RBP13.37□□□□□ -0.27
CHMP4A-201ENST00000347519 F5H697 171 aa13.36□□□□□ -0.27
CHMP4A-201ENST00000347519 NCR2O95944 276 aa13.36□□□□□ -0.27
CHMP4A-201ENST00000347519 HLA-DQA1P01909 254 aa13.36□□□□□ -0.27
CHMP4A-201ENST00000347519 P0DMU3 169 aa13.36□□□□□ -0.27
CHMP4A-201ENST00000347519 FAM231AP0DMU4 169 aa13.36□□□□□ -0.27
CHMP4A-201ENST00000347519 FAM231CP0DMU5 169 aa13.36□□□□□ -0.27
CHMP4A-201ENST00000347519 GATA1P15976 413 aaPredicted RBP13.36□□□□□ -0.27
CHMP4A-201ENST00000347519 KIAA1644Q3SXP7 199 aa13.36□□□□□ -0.27
CHMP4A-201ENST00000347519 COX19Q49B96 90 aa13.36□□□□□ -0.27
CHMP4A-201ENST00000347519 TRGV4A0A0C4DH28 118 aa13.35□□□□□ -0.27
CHMP4A-201ENST00000347519 RPS10P46783 165 aaKnown RBP13.35□□□□□ -0.27
CHMP4A-201ENST00000347519 TRAPPC1Q9Y5R8 145 aa13.35□□□□□ -0.27
CHMP4A-201ENST00000347519 F5H768 121 aa13.34□□□□□ -0.27
CHMP4A-201ENST00000347519 APCSP02743 223 aa13.34□□□□□ -0.27
CHMP4A-201ENST00000347519 FABP9Q0Z7S8 132 aa13.34□□□□□ -0.27
CHMP4A-201ENST00000347519 M0QY20 66 aa13.33□□□□□ -0.27
CHMP4A-201ENST00000347519 SLC25A29Q8N8R3 303 aa13.33□□□□□ -0.27
CHMP4A-201ENST00000347519 FRZBQ92765 325 aa13.33□□□□□ -0.27
CHMP4A-201ENST00000347519 LOC100131303A0A0U1RQF7 123 aa13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 CIDEAO60543 219 aa13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 MT-ND6P03923 174 aa13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 RPL39LQ96EH5 51 aaKnown RBP13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 HHLA3Q9XRX5 114 aa13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 D6R8Y8 96 aa13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 PHOX2AO14813 284 aa13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 TRGC2P03986 189 aa13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 CRYBA4P53673 196 aa13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 MRAP2Q96G30 205 aa13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 VSIG2Q96IQ7 327 aa13.32□□□□□ -0.28
CHMP4A-201ENST00000347519 DEFB131BA0A096LNP1 70 aa13.31□□□□□ -0.28
CHMP4A-201ENST00000347519 A0A0J9YY99 117 aa13.31□□□□□ -0.28
CHMP4A-201ENST00000347519 K7EQD1 137 aa13.31□□□□□ -0.28
CHMP4A-201ENST00000347519 CKS2P33552 79 aa13.31□□□□□ -0.28
CHMP4A-201ENST00000347519 NRACQ8N912 160 aa13.31□□□□□ -0.28
CHMP4A-201ENST00000347519 TRBV6-4A0A1B0GX49 114 aa13.3□□□□□ -0.28
CHMP4A-201ENST00000347519 PRO0255Q9UI72 69 aa13.3□□□□□ -0.28
CHMP4A-201ENST00000347519 TRAV26-1A0A087WT03 109 aa13.29□□□□□ -0.28
CHMP4A-201ENST00000347519 TRAV10A0A0B4J240 114 aa13.29□□□□□ -0.28
CHMP4A-201ENST00000347519 NEXN-AS1Q8NBZ9 246 aa13.29□□□□□ -0.28
CHMP4A-201ENST00000347519 PHLDA1Q8WV24 401 aaPredicted RBP13.29□□□□□ -0.28
CHMP4A-201ENST00000347519 PAX4O43316 350 aa13.28□□□□□ -0.28
CHMP4A-201ENST00000347519 NPYP01303 97 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms