RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 F8VRH5 84 aa11.44□□□□□ -0.58
UPF3B-202ENST00000345865 K7EMI3 77 aa11.44□□□□□ -0.58
UPF3B-202ENST00000345865 CDKN1BP46527 198 aa11.44□□□□□ -0.58
UPF3B-202ENST00000345865 BAALCQ8WXS3 180 aa11.44□□□□□ -0.58
UPF3B-202ENST00000345865 NF1P21359 2839 aa11.43□□□□□ -0.58
UPF3B-202ENST00000345865 H7C1H1 209 aa11.43□□□□□ -0.58
UPF3B-202ENST00000345865 POLR2KP53803 58 aaKnown RBP11.43□□□□□ -0.58
UPF3B-202ENST00000345865 TCTEX1D4Q5JR98 221 aa11.43□□□□□ -0.58
UPF3B-202ENST00000345865 AMTNQ6UX39 209 aa11.43□□□□□ -0.58
UPF3B-202ENST00000345865 NAA38Q9BRA0 125 aaKnown RBP11.43□□□□□ -0.58
UPF3B-202ENST00000345865 ITPR3Q14573 2671 aa11.43□□□□□ -0.58
UPF3B-202ENST00000345865 SONP18583 2426 aaKnown RBP11.43□□□□□ -0.58
UPF3B-202ENST00000345865 H3BRM9 83 aa11.43□□□□□ -0.58
UPF3B-202ENST00000345865 PLNP26678 52 aa11.43□□□□□ -0.58
UPF3B-202ENST00000345865 JMJD8Q96S16 334 aa11.43□□□□□ -0.58
UPF3B-202ENST00000345865 HIGD1BQ9P298 99 aa11.43□□□□□ -0.58
UPF3B-202ENST00000345865 CHTOPQ9Y3Y2 248 aaKnown RBP11.43□□□□□ -0.58
UPF3B-202ENST00000345865 A6NDN8 102 aa11.42□□□□□ -0.58
UPF3B-202ENST00000345865 DUSP14O95147 198 aaKnown RBP11.42□□□□□ -0.58
UPF3B-202ENST00000345865 PPP1R17O96001 155 aa11.42□□□□□ -0.58
UPF3B-202ENST00000345865 FXYD2P54710 66 aa11.42□□□□□ -0.58
UPF3B-202ENST00000345865 DUX3Q96PT4 197 aa11.42□□□□□ -0.58
UPF3B-202ENST00000345865 CHAC1Q9BUX1 264 aa11.42□□□□□ -0.58
UPF3B-202ENST00000345865 F5H697 171 aa11.42□□□□□ -0.58
UPF3B-202ENST00000345865 RBMY1A1P0DJD3 496 aaKnown RBP11.42□□□□□ -0.58
UPF3B-202ENST00000345865 RBMY1CP0DJD4 496 aa11.42□□□□□ -0.58
UPF3B-202ENST00000345865 RBMY1FQ15415 496 aaKnown RBP11.42□□□□□ -0.58
UPF3B-202ENST00000345865 FAM74A4Q5TZK3 123 aa11.42□□□□□ -0.58
UPF3B-202ENST00000345865 RNASE8Q8TDE3 154 aaKnown RBP11.42□□□□□ -0.58
UPF3B-202ENST00000345865 IGHV1OR15-1A0A075B7D0 117 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 TSHBP01222 138 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 HLA-DRB4P13762 266 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 Q8N2B8 174 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 RAB37Q96AX2 223 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 HLA-DRB4X5D2U9 266 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 C9orf118A6NHY6 69 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 PRSS29PA6NIE9 313 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 CRYGDP07320 174 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 MORN3Q6PF18 240 aaPredicted RBP11.41□□□□□ -0.58
UPF3B-202ENST00000345865 FOXI2Q6ZQN5 318 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 LRRC75A-AS1Q8N1F1 130 aa11.41□□□□□ -0.58
UPF3B-202ENST00000345865 KNCNA6PVL3 124 aa11.4□□□□□ -0.58
UPF3B-202ENST00000345865 GCSHP23434 173 aa11.4□□□□□ -0.58
UPF3B-202ENST00000345865 RPL32P62910 135 aaKnown RBP11.4□□□□□ -0.58
UPF3B-202ENST00000345865 ZFP2Q6ZN57 461 aa11.4□□□□□ -0.58
UPF3B-202ENST00000345865 TENM4Q6N022 2769 aa11.4□□□□□ -0.59
UPF3B-202ENST00000345865 H3BUT2 72 aa11.4□□□□□ -0.59
UPF3B-202ENST00000345865 RPL39P62891 51 aaKnown RBP11.4□□□□□ -0.59
UPF3B-202ENST00000345865 CHD6Q8TD26 2715 aa11.39□□□□□ -0.59
UPF3B-202ENST00000345865 SDHAF1A6NFY7 115 aa11.39□□□□□ -0.59
UPF3B-202ENST00000345865 FOSL1P15407 271 aa11.39□□□□□ -0.59
UPF3B-202ENST00000345865 IGIPA6NJ69 53 aa11.38□□□□□ -0.59
UPF3B-202ENST00000345865 OR11H1Q8NG94 326 aa11.38□□□□□ -0.59
UPF3B-202ENST00000345865 TP53TG1Q9Y2A0 90 aa11.38□□□□□ -0.59
UPF3B-202ENST00000345865 M0QY20 66 aa11.38□□□□□ -0.59
UPF3B-202ENST00000345865 DEFB131AP59861 70 aa11.38□□□□□ -0.59
UPF3B-202ENST00000345865 VCYO14598 125 aa11.37□□□□□ -0.59
UPF3B-202ENST00000345865 PRM2P04554 102 aa11.37□□□□□ -0.59
UPF3B-202ENST00000345865 CYSLTR1Q9Y271 337 aa11.37□□□□□ -0.59
UPF3B-202ENST00000345865 TRBV27A0A0K0K1C4 114 aa11.37□□□□□ -0.59
UPF3B-202ENST00000345865 RBMY1BA6NDE4 496 aaKnown RBP11.37□□□□□ -0.59
UPF3B-202ENST00000345865 RBMY1EA6NEQ0 496 aaKnown RBP11.37□□□□□ -0.59
UPF3B-202ENST00000345865 RBMY1DP0C7P1 496 aaKnown RBP11.37□□□□□ -0.59
UPF3B-202ENST00000345865 CCDC168Q8NDH2 2452 aa11.37□□□□□ -0.59
UPF3B-202ENST00000345865 TRBV6-5A0A0K0K1A5 114 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 LINC01619G3V211 115 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 K7ERJ3 54 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 ZNF56Q15929 161 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 ZNF876PQ49A33 203 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 TMEM61Q8N0U2 210 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 UFSP1Q6NVU6 142 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 CEND1Q8N111 149 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 SYT8Q8NBV8 401 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 DLX4Q92988 240 aaPredicted RBP11.36□□□□□ -0.59
UPF3B-202ENST00000345865 KIR2DL4Q99706 377 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 TM2D2Q9BX73 214 aa11.36□□□□□ -0.59
UPF3B-202ENST00000345865 ZNF256Q9Y2P7 627 aaPredicted RBP11.36□□□□□ -0.59
UPF3B-202ENST00000345865 FLNAP21333 2647 aaKnown RBP11.35□□□□□ -0.59
UPF3B-202ENST00000345865 IGLV4-69A0A075B6H9 119 aa11.35□□□□□ -0.59
UPF3B-202ENST00000345865 GAGE10A6NGK3 116 aa11.35□□□□□ -0.59
UPF3B-202ENST00000345865 H3BMM0 161 aa11.35□□□□□ -0.59
UPF3B-202ENST00000345865 HTN1P15515 57 aa11.35□□□□□ -0.59
UPF3B-202ENST00000345865 EMP1P54849 157 aa11.35□□□□□ -0.59
UPF3B-202ENST00000345865 KHDC1LQ5JSQ8 128 aa11.35□□□□□ -0.59
UPF3B-202ENST00000345865 WFDC11Q8NEX6 87 aa11.35□□□□□ -0.59
UPF3B-202ENST00000345865 PHLDA1Q8WV24 401 aaPredicted RBP11.35□□□□□ -0.59
UPF3B-202ENST00000345865 C4orf3Q8WVX3 66 aa11.34□□□□□ -0.59
UPF3B-202ENST00000345865 GAGE12BA1L429 117 aa11.34□□□□□ -0.59
UPF3B-202ENST00000345865 C11orf86A6NJI1 115 aa11.34□□□□□ -0.59
UPF3B-202ENST00000345865 A8MTW9 85 aa11.34□□□□□ -0.59
UPF3B-202ENST00000345865 OR11H12B2RN74 326 aa11.34□□□□□ -0.59
UPF3B-202ENST00000345865 SMIM13P0DJ93 91 aa11.34□□□□□ -0.59
UPF3B-202ENST00000345865 RIPPLY3P57055 190 aa11.34□□□□□ -0.59
UPF3B-202ENST00000345865 HIST2H2BCQ6DN03 193 aa11.34□□□□□ -0.59
UPF3B-202ENST00000345865 OR11H2Q8NH07 326 aa11.34□□□□□ -0.59
UPF3B-202ENST00000345865 PRADC1Q9BSG0 188 aa11.34□□□□□ -0.59
UPF3B-202ENST00000345865 ANK3Q12955 4377 aaKnown RBP11.33□□□□□ -0.6
UPF3B-202ENST00000345865 MYMXA0A1B0GTQ4 84 aa11.33□□□□□ -0.6
UPF3B-202ENST00000345865 E9PLD3 99 aa11.33□□□□□ -0.6
UPF3B-202ENST00000345865 RBX1P62877 108 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms