RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 C11orf44Q8N8P7 122 aa11.17□□□□□ -0.62
TPM3-208ENST00000341485 MRPL35Q9NZE8 188 aaKnown RBP11.17□□□□□ -0.62
TPM3-208ENST00000341485 SLURP1P55000 103 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 HSD52Q0P140 79 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 FAM159AQ6UWV7 190 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 POM121L12Q8N7R1 296 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 KIF25-AS1Q9Y6Z4 181 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 NOTCH2Q04721 2471 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 TRAV12-3A0A0B4J271 114 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 K7EQG2 157 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 NDUFA7O95182 113 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 CD28P10747 220 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 LINC00315P59091 139 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 ORMDL2Q53FV1 153 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 HIST2H2BDQ6DRA6 164 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 GTSCR1Q86UQ5 136 aa11.16□□□□□ -0.62
TPM3-208ENST00000341485 A0A087WX48 190 aa11.15□□□□□ -0.62
TPM3-208ENST00000341485 A0A0J9YX75 114 aa11.15□□□□□ -0.62
TPM3-208ENST00000341485 TTTY13Q9BZ97 58 aa11.15□□□□□ -0.62
TPM3-208ENST00000341485 A0A1W2PRX2 142 aa11.15□□□□□ -0.63
TPM3-208ENST00000341485 ZC2HC1BQ5TFG8 222 aa11.15□□□□□ -0.63
TPM3-208ENST00000341485 TOMM6Q96B49 74 aa11.15□□□□□ -0.63
TPM3-208ENST00000341485 DUX3Q96PT4 197 aa11.15□□□□□ -0.63
TPM3-208ENST00000341485 ODF3Q96PU9 254 aa11.15□□□□□ -0.63
TPM3-208ENST00000341485 JPT2Q9H910 190 aa11.15□□□□□ -0.63
TPM3-208ENST00000341485 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.14□□□□□ -0.63
TPM3-208ENST00000341485 CD7P09564 240 aa11.14□□□□□ -0.63
TPM3-208ENST00000341485 SNRPD3P62318 126 aaKnown RBP11.14□□□□□ -0.63
TPM3-208ENST00000341485 CRLF1O75462 422 aa11.13□□□□□ -0.63
TPM3-208ENST00000341485 IGKV3-20P01619 116 aa11.13□□□□□ -0.63
TPM3-208ENST00000341485 TSSC4Q9Y5U2 329 aaPredicted RBP11.13□□□□□ -0.63
TPM3-208ENST00000341485 TRAV12-2A0A075B6T6 113 aa11.13□□□□□ -0.63
TPM3-208ENST00000341485 K7EMI3 77 aa11.13□□□□□ -0.63
TPM3-208ENST00000341485 SCGB3A1Q96QR1 104 aa11.13□□□□□ -0.63
TPM3-208ENST00000341485 CITED2Q99967 270 aaPredicted RBP11.13□□□□□ -0.63
TPM3-208ENST00000341485 PEMTQ9UBM1 199 aa11.13□□□□□ -0.63
TPM3-208ENST00000341485 TRAV12-1A0A0B4J245 112 aa11.12□□□□□ -0.63
TPM3-208ENST00000341485 TRAV8-6A0A0B4J262 113 aa11.12□□□□□ -0.63
TPM3-208ENST00000341485 AMMECR1LQ6DCA0 310 aa11.12□□□□□ -0.63
TPM3-208ENST00000341485 CSTL1Q9H114 145 aa11.12□□□□□ -0.63
TPM3-208ENST00000341485 OTOGQ6ZRI0 2925 aa11.12□□□□□ -0.63
TPM3-208ENST00000341485 IGHV3-16A0A0C4DH30 117 aa11.12□□□□□ -0.63
TPM3-208ENST00000341485 PPP1R17O96001 155 aa11.12□□□□□ -0.63
TPM3-208ENST00000341485 C9orf85Q96MD7 179 aa11.12□□□□□ -0.63
TPM3-208ENST00000341485 AGRNO00468 2067 aa11.12□□□□□ -0.63
TPM3-208ENST00000341485 A6NDN8 102 aa11.11□□□□□ -0.63
TPM3-208ENST00000341485 C2orf66Q6UXQ4 117 aa11.11□□□□□ -0.63
TPM3-208ENST00000341485 NEGR1Q7Z3B1 354 aa11.11□□□□□ -0.63
TPM3-208ENST00000341485 OR4C5Q8NGB2 326 aa11.11□□□□□ -0.63
TPM3-208ENST00000341485 HIGD1BQ9P298 99 aa11.11□□□□□ -0.63
TPM3-208ENST00000341485 A0A087WWL8 130 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 H3BRM9 83 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 H7C1H1 209 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 HLA-DRB4P13762 266 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 PLNP26678 52 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 SUMO4Q6EEV6 95 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 NEXN-AS1Q8NBZ9 246 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 DLX4Q92988 240 aaPredicted RBP11.1□□□□□ -0.63
TPM3-208ENST00000341485 MDFICQ9P1T7 246 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 HLA-DRB4X5D2U9 266 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 F8VRH5 84 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 SPINK13Q1W4C9 94 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 RAX2Q96IS3 184 aa11.1□□□□□ -0.63
TPM3-208ENST00000341485 CDKN1BP46527 198 aa11.09□□□□□ -0.63
TPM3-208ENST00000341485 PROK1P58294 105 aa11.09□□□□□ -0.63
TPM3-208ENST00000341485 RPL32P62910 135 aaKnown RBP11.09□□□□□ -0.63
TPM3-208ENST00000341485 CHAC1Q9BUX1 264 aa11.09□□□□□ -0.63
TPM3-208ENST00000341485 CHTOPQ9Y3Y2 248 aaKnown RBP11.09□□□□□ -0.63
TPM3-208ENST00000341485 TRBV25-1A0A075B6N4 114 aa11.08□□□□□ -0.63
TPM3-208ENST00000341485 CCL24O00175 119 aa11.08□□□□□ -0.63
TPM3-208ENST00000341485 Q8N1Y9 231 aa11.08□□□□□ -0.63
TPM3-208ENST00000341485 MAPKAPK5-AS1Q8N8E1 139 aa11.08□□□□□ -0.63
TPM3-208ENST00000341485 BAALCQ8WXS3 180 aa11.08□□□□□ -0.63
TPM3-208ENST00000341485 IGHV1OR15-1A0A075B7D0 117 aa11.08□□□□□ -0.64
TPM3-208ENST00000341485 DUSP14O95147 198 aaKnown RBP11.08□□□□□ -0.64
TPM3-208ENST00000341485 POLR2KP53803 58 aaKnown RBP11.08□□□□□ -0.64
TPM3-208ENST00000341485 AMTNQ6UX39 209 aa11.08□□□□□ -0.64
TPM3-208ENST00000341485 MTORP42345 2549 aa11.07□□□□□ -0.64
TPM3-208ENST00000341485 C9orf118A6NHY6 69 aa11.07□□□□□ -0.64
TPM3-208ENST00000341485 FOXI2Q6ZQN5 318 aa11.07□□□□□ -0.64
TPM3-208ENST00000341485 DYNLRB2Q8TF09 96 aa11.07□□□□□ -0.64
TPM3-208ENST00000341485 CUBNO60494 3623 aa11.07□□□□□ -0.64
TPM3-208ENST00000341485 F5H697 171 aa11.07□□□□□ -0.64
TPM3-208ENST00000341485 K7EP13 123 aa11.07□□□□□ -0.64
TPM3-208ENST00000341485 FXYD2P54710 66 aa11.06□□□□□ -0.64
TPM3-208ENST00000341485 FHL3Q13643 280 aa11.06□□□□□ -0.64
TPM3-208ENST00000341485 PRSS29PA6NIE9 313 aa11.05□□□□□ -0.64
TPM3-208ENST00000341485 GCSHP23434 173 aa11.05□□□□□ -0.64
TPM3-208ENST00000341485 NSUN5P1Q3KNT7 163 aa11.05□□□□□ -0.64
TPM3-208ENST00000341485 SYT8Q8NBV8 401 aa11.05□□□□□ -0.64
TPM3-208ENST00000341485 DEFB104AQ8WTQ1 72 aa11.05□□□□□ -0.64
TPM3-208ENST00000341485 NAA38Q9BRA0 125 aaKnown RBP11.05□□□□□ -0.64
TPM3-208ENST00000341485 SORL1Q92673 2214 aa11.05□□□□□ -0.64
TPM3-208ENST00000341485 FAM74A4Q5TZK3 123 aa11.05□□□□□ -0.64
TPM3-208ENST00000341485 ZFP2Q6ZN57 461 aa11.05□□□□□ -0.64
TPM3-208ENST00000341485 RNASE8Q8TDE3 154 aaKnown RBP11.05□□□□□ -0.64
TPM3-208ENST00000341485 CYSLTR1Q9Y271 337 aa11.05□□□□□ -0.64
TPM3-208ENST00000341485 KNCNA6PVL3 124 aa11.04□□□□□ -0.64
TPM3-208ENST00000341485 H3BUT2 72 aa11.04□□□□□ -0.64
TPM3-208ENST00000341485 VCYO14598 125 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms