RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 DPH3P1Q9H4G8 78 aa12.6□□□□□ -0.39
CLDN4-201ENST00000340958 NUPR1O60356 82 aa12.6□□□□□ -0.39
CLDN4-201ENST00000340958 OR10J3Q5JRS4 329 aa12.6□□□□□ -0.39
CLDN4-201ENST00000340958 SAMD5Q5TGI4 173 aa12.6□□□□□ -0.39
CLDN4-201ENST00000340958 C2orf88Q9BSF0 95 aa12.6□□□□□ -0.39
CLDN4-201ENST00000340958 DNAH3Q8TD57 4116 aa12.59□□□□□ -0.39
CLDN4-201ENST00000340958 A0A1B0GV90 55 aa12.59□□□□□ -0.39
CLDN4-201ENST00000340958 NXPH4O95158 308 aa12.59□□□□□ -0.39
CLDN4-201ENST00000340958 AZU1P20160 251 aa12.59□□□□□ -0.39
CLDN4-201ENST00000340958 KRTAP10-11P60412 298 aa12.59□□□□□ -0.39
CLDN4-201ENST00000340958 M0R2P5 195 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 IGHV4-30-4P0DP06 118 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 Q0VG73 95 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 RRN3P1Q2M238 152 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 CSNK1G2-AS1Q8NCQ2 148 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 RNF185Q96GF1 192 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 PRELID3AQ96N28 172 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 KIR2DL5BA0A0G2JN68 375 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 KIR2DL5BA0A0G2JPC4 375 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 SMKR1H3BMG3 65 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 NCR2O95944 276 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 ESDP10768 282 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 EGFEM1PQ0D2K5 195 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 FAM74A4Q5TZK3 123 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 KIR2DL5AQ8N109 375 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 KIR2DL5BQ8NHK3 375 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 C18orf32Q8TCD1 76 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 TMEM263Q8WUH6 116 aaKnown RBP12.58□□□□□ -0.4
CLDN4-201ENST00000340958 SPXQ9BT56 116 aa12.58□□□□□ -0.4
CLDN4-201ENST00000340958 A0A087WWL8 130 aa12.57□□□□□ -0.4
CLDN4-201ENST00000340958 F5H697 171 aa12.57□□□□□ -0.4
CLDN4-201ENST00000340958 PPBPP02775 128 aa12.57□□□□□ -0.4
CLDN4-201ENST00000340958 C11orf72Q8NBR9 251 aa12.57□□□□□ -0.4
CLDN4-201ENST00000340958 JPT2Q9H910 190 aa12.57□□□□□ -0.4
CLDN4-201ENST00000340958 C16orf74Q96GX8 76 aa12.56□□□□□ -0.4
CLDN4-201ENST00000340958 TRAV26-2A0A0B4J265 109 aa12.55□□□□□ -0.4
CLDN4-201ENST00000340958 LINC00310P59036 64 aa12.55□□□□□ -0.4
CLDN4-201ENST00000340958 ZNF705AQ6ZN79 300 aaPredicted RBP12.55□□□□□ -0.4
CLDN4-201ENST00000340958 SERF1AO75920 110 aa12.55□□□□□ -0.4
CLDN4-201ENST00000340958 RNASE8Q8TDE3 154 aaKnown RBP12.55□□□□□ -0.4
CLDN4-201ENST00000340958 MRPL16Q9NX20 251 aaKnown RBP12.55□□□□□ -0.4
CLDN4-201ENST00000340958 U3KQK5 164 aa12.55□□□□□ -0.4
CLDN4-201ENST00000340958 SCGB1D1O95968 90 aa12.54□□□□□ -0.4
CLDN4-201ENST00000340958 KPRPQ5T749 579 aaPredicted RBP12.54□□□□□ -0.4
CLDN4-201ENST00000340958 RNASEKQ6P5S7 137 aaKnown RBP12.54□□□□□ -0.4
CLDN4-201ENST00000340958 MRAP2Q96G30 205 aa12.54□□□□□ -0.4
CLDN4-201ENST00000340958 MUC4Q99102 2169 aa12.54□□□□□ -0.4
CLDN4-201ENST00000340958 TRGV1A0A0A0MS02 117 aa12.53□□□□□ -0.4
CLDN4-201ENST00000340958 LOC389332A0A1B0GUA5 103 aa12.53□□□□□ -0.4
CLDN4-201ENST00000340958 ZNF56Q15929 161 aa12.53□□□□□ -0.4
CLDN4-201ENST00000340958 DEFB135Q30KP9 77 aa12.53□□□□□ -0.4
CLDN4-201ENST00000340958 PRSS3P2Q8NHM4 247 aa12.53□□□□□ -0.4
CLDN4-201ENST00000340958 SAMD10Q9BYL1 202 aa12.53□□□□□ -0.4
CLDN4-201ENST00000340958 A8MWV9 139 aa12.52□□□□□ -0.41
CLDN4-201ENST00000340958 EMP1P54849 157 aa12.52□□□□□ -0.41
CLDN4-201ENST00000340958 NIT1Q86X76 327 aa12.52□□□□□ -0.41
CLDN4-201ENST00000340958 NOP10Q9NPE3 64 aaKnown RBP12.52□□□□□ -0.41
CLDN4-201ENST00000340958 LAMTOR2Q9Y2Q5 125 aa12.52□□□□□ -0.41
CLDN4-201ENST00000340958 TNFRSF6BO95407 300 aa12.51□□□□□ -0.41
CLDN4-201ENST00000340958 NPYP01303 97 aa12.51□□□□□ -0.41
CLDN4-201ENST00000340958 PRB2P02812 416 aaPredicted RBP12.51□□□□□ -0.41
CLDN4-201ENST00000340958 GATA1P15976 413 aaPredicted RBP12.51□□□□□ -0.41
CLDN4-201ENST00000340958 MAP1LC3AQ9H492 121 aa12.51□□□□□ -0.41
CLDN4-201ENST00000340958 PRKDCP78527 4128 aaKnown RBP12.51□□□□□ -0.41
CLDN4-201ENST00000340958 IGHV3-73A0A0B4J1V6 119 aa12.51□□□□□ -0.41
CLDN4-201ENST00000340958 GAS8-AS1O95177 125 aa12.51□□□□□ -0.41
CLDN4-201ENST00000340958 PIK3CD-AS1Q5SR53 167 aa12.51□□□□□ -0.41
CLDN4-201ENST00000340958 Q6ZWC4 215 aa12.51□□□□□ -0.41
CLDN4-201ENST00000340958 FA2HQ7L5A8 372 aa12.51□□□□□ -0.41
CLDN4-201ENST00000340958 PTH2Q96A98 100 aa12.51□□□□□ -0.41
CLDN4-201ENST00000340958 KIF25-AS1Q9Y6Z4 181 aa12.51□□□□□ -0.41
CLDN4-201ENST00000340958 SMIM9A6NGZ8 99 aa12.5□□□□□ -0.41
CLDN4-201ENST00000340958 HSBP1O75506 76 aa12.5□□□□□ -0.41
CLDN4-201ENST00000340958 CRYGDP07320 174 aa12.5□□□□□ -0.41
CLDN4-201ENST00000340958 LINC00614P0C842 121 aa12.5□□□□□ -0.41
CLDN4-201ENST00000340958 EREGO14944 169 aa12.49□□□□□ -0.41
CLDN4-201ENST00000340958 PMCHP20382 165 aa12.49□□□□□ -0.41
CLDN4-201ENST00000340958 RASL10AQ92737 203 aa12.49□□□□□ -0.41
CLDN4-201ENST00000340958 PPP1R17O96001 155 aa12.48□□□□□ -0.41
CLDN4-201ENST00000340958 DAZ2Q13117 558 aaKnown RBP12.48□□□□□ -0.41
CLDN4-201ENST00000340958 SUMO4Q6EEV6 95 aa12.48□□□□□ -0.41
CLDN4-201ENST00000340958 TEX43Q6ZNM6 134 aa12.48□□□□□ -0.41
CLDN4-201ENST00000340958 OR11H2Q8NH07 326 aa12.48□□□□□ -0.41
CLDN4-201ENST00000340958 IL17DQ8TAD2 202 aa12.48□□□□□ -0.41
CLDN4-201ENST00000340958 IFI27P40305 119 aaPredicted RBP12.48□□□□□ -0.41
CLDN4-201ENST00000340958 LGALS9BQ3B8N2 356 aa12.48□□□□□ -0.41
CLDN4-201ENST00000340958 OR4C5Q8NGB2 326 aa12.48□□□□□ -0.41
CLDN4-201ENST00000340958 CHCHD1Q96BP2 118 aaKnown RBP12.48□□□□□ -0.41
CLDN4-201ENST00000340958 SNHG12Q9BXW3 62 aa12.48□□□□□ -0.41
CLDN4-201ENST00000340958 AMTP48728 403 aa12.47□□□□□ -0.41
CLDN4-201ENST00000340958 LINC00315P59091 139 aa12.47□□□□□ -0.41
CLDN4-201ENST00000340958 CFAP126Q5VTH2 177 aa12.47□□□□□ -0.41
CLDN4-201ENST00000340958 Q6ZTI0 123 aa12.47□□□□□ -0.41
CLDN4-201ENST00000340958 MRPL52Q86TS9 123 aaKnown RBP12.47□□□□□ -0.41
CLDN4-201ENST00000340958 TRGV2A0A075B6R0 118 aa12.46□□□□□ -0.41
CLDN4-201ENST00000340958 RHODO00212 210 aa12.46□□□□□ -0.41
CLDN4-201ENST00000340958 POM121L12Q8N7R1 296 aa12.46□□□□□ -0.41
CLDN4-201ENST00000340958 NRACQ8N912 160 aa12.46□□□□□ -0.41
CLDN4-201ENST00000340958 RPL39LQ96EH5 51 aaKnown RBP12.46□□□□□ -0.41
CLDN4-201ENST00000340958 AP5S1Q9NUS5 200 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms