RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 C20orf173Q96LM9 149 aa8.11□□□□□ -1.11
RTN3-201ENST00000338850 CHAC1Q9BUX1 264 aa8.11□□□□□ -1.11
RTN3-201ENST00000338850 TRBV25-1A0A075B6N4 114 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 IGHV3OR16-8A0A075B7F1 116 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 A0A1W2PPM0 123 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 GAGE12BA1L429 117 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 H3BVH4 76 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 GAS8-AS1O95177 125 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 SMIM13P0DJ93 91 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 PAPPA-AS1Q5QFB9 102 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 PRR9Q5T870 116 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 ZC2HC1BQ5TFG8 222 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 TMEM86BQ8N661 226 aa8.1□□□□□ -1.11
RTN3-201ENST00000338850 DAZ1Q9NQZ3 744 aaKnown RBP8.1□□□□□ -1.11
RTN3-201ENST00000338850 TRRAPQ9Y4A5 3859 aa8.09□□□□□ -1.11
RTN3-201ENST00000338850 A0A1B0GWB2 263 aa8.09□□□□□ -1.11
RTN3-201ENST00000338850 NDUFA7O95182 113 aa8.09□□□□□ -1.11
RTN3-201ENST00000338850 GATA1P15976 413 aaPredicted RBP8.09□□□□□ -1.11
RTN3-201ENST00000338850 ID1P41134 155 aa8.09□□□□□ -1.11
RTN3-201ENST00000338850 NEXN-AS1Q8NBZ9 246 aa8.09□□□□□ -1.11
RTN3-201ENST00000338850 PHLDA1Q8WV24 401 aaPredicted RBP8.09□□□□□ -1.11
RTN3-201ENST00000338850 WFDC12Q8WWY7 111 aa8.09□□□□□ -1.11
RTN3-201ENST00000338850 C18orf15Q96N68 181 aa8.09□□□□□ -1.11
RTN3-201ENST00000338850 UFC1Q9Y3C8 167 aa8.09□□□□□ -1.11
RTN3-201ENST00000338850 IGKV2D-26A0A0A0MRZ7 120 aa8.08□□□□□ -1.12
RTN3-201ENST00000338850 IGHV3-66A0A0C4DH42 116 aa8.08□□□□□ -1.12
RTN3-201ENST00000338850 TRBV6-5A0A0K0K1A5 114 aa8.08□□□□□ -1.12
RTN3-201ENST00000338850 FABP2P12104 132 aa8.08□□□□□ -1.12
RTN3-201ENST00000338850 UNQ9165/PRO28630Q6UXU0 137 aa8.08□□□□□ -1.12
RTN3-201ENST00000338850 NEGR1Q7Z3B1 354 aa8.08□□□□□ -1.12
RTN3-201ENST00000338850 CEND1Q8N111 149 aa8.08□□□□□ -1.12
RTN3-201ENST00000338850 RASL10AQ92737 203 aa8.08□□□□□ -1.12
RTN3-201ENST00000338850 MRPL35Q9NZE8 188 aaKnown RBP8.08□□□□□ -1.12
RTN3-201ENST00000338850 PHLDA3Q9Y5J5 127 aa8.08□□□□□ -1.12
RTN3-201ENST00000338850 NOTCH1P46531 2555 aa8.07□□□□□ -1.12
RTN3-201ENST00000338850 ZNF207O43670 478 aaKnown RBP8.07□□□□□ -1.12
RTN3-201ENST00000338850 IGHV4-59P01825 116 aa8.07□□□□□ -1.12
RTN3-201ENST00000338850 FXYD7P58549 80 aa8.07□□□□□ -1.12
RTN3-201ENST00000338850 ERASQ7Z444 233 aa8.07□□□□□ -1.12
RTN3-201ENST00000338850 TMEM219Q86XT9 240 aa8.07□□□□□ -1.12
RTN3-201ENST00000338850 KIF25-AS1Q9Y6Z4 181 aa8.07□□□□□ -1.12
RTN3-201ENST00000338850 VWFP04275 2813 aa8.07□□□□□ -1.12
RTN3-201ENST00000338850 E9PLD3 99 aa8.06□□□□□ -1.12
RTN3-201ENST00000338850 H3BUT2 72 aa8.06□□□□□ -1.12
RTN3-201ENST00000338850 PRB4P10163 310 aaPredicted RBP8.06□□□□□ -1.12
RTN3-201ENST00000338850 RNASE3P12724 160 aaKnown RBP8.06□□□□□ -1.12
RTN3-201ENST00000338850 S100A4P26447 101 aaKnown RBP8.06□□□□□ -1.12
RTN3-201ENST00000338850 PCP4P48539 62 aa8.06□□□□□ -1.12
RTN3-201ENST00000338850 ANXA2RQ3ZCQ2 193 aa8.06□□□□□ -1.12
RTN3-201ENST00000338850 TIMM17AQ99595 171 aa8.06□□□□□ -1.12
RTN3-201ENST00000338850 CITED1Q99966 193 aa8.06□□□□□ -1.12
RTN3-201ENST00000338850 RHPN1-AS1Q9BWJ2 59 aa8.06□□□□□ -1.12
RTN3-201ENST00000338850 EDA2RQ9HAV5 297 aa8.06□□□□□ -1.12
RTN3-201ENST00000338850 SPCS1Q9Y6A9 102 aa8.06□□□□□ -1.12
RTN3-201ENST00000338850 WNK1Q9H4A3 2382 aa8.06□□□□□ -1.12
RTN3-201ENST00000338850 TRBV7-3A0A075B6L6 115 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 IGHV3OR16-13A0A075B7E8 117 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 IGHV3-74A0A0B4J1X5 117 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 OR11H12B2RN74 326 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 H3BUX3 64 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 FXYD2P54710 66 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 LINC00315P59091 139 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 KRTAP10-3P60369 221 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 SAMD5Q5TGI4 173 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 OR11H1Q8NG94 326 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 OR11H2Q8NH07 326 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 LINC01006Q8NI28 216 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 TMEM141Q96I45 108 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 C9orf85Q96MD7 179 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 SCGB3A1Q96QR1 104 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 KRTAP3-3Q9BYR6 98 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 KRTAP3-2Q9BYR7 98 aa8.05□□□□□ -1.12
RTN3-201ENST00000338850 CHTOPQ9Y3Y2 248 aaKnown RBP8.05□□□□□ -1.12
RTN3-201ENST00000338850 TGP01266 2768 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 IGHV3-49A0A0A0MS15 119 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 LGALS9O00182 355 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 TRBV12-3P01733 135 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 GCSHP23434 173 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 PSMB8P28062 276 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 POLR2KP53803 58 aaKnown RBP8.04□□□□□ -1.12
RTN3-201ENST00000338850 PROK1P58294 105 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 C2orf66Q6UXQ4 117 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 GTSCR1Q86UQ5 136 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 WFDC3Q8IUB2 231 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 DCANP1Q8TF63 244 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 BAALCQ8WXS3 180 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 CYSLTR1Q9Y271 337 aa8.04□□□□□ -1.12
RTN3-201ENST00000338850 TRAV26-2A0A0B4J265 109 aa8.03□□□□□ -1.12
RTN3-201ENST00000338850 MYMXA0A1B0GTQ4 84 aa8.03□□□□□ -1.12
RTN3-201ENST00000338850 PF4V1P10720 104 aa8.03□□□□□ -1.12
RTN3-201ENST00000338850 RHOHQ15669 191 aa8.03□□□□□ -1.12
RTN3-201ENST00000338850 Q6ZSV7 163 aa8.03□□□□□ -1.12
RTN3-201ENST00000338850 TRBV27A0A0K0K1C4 114 aa8.02□□□□□ -1.13
RTN3-201ENST00000338850 TMEM238LA0A1B0GVL6 79 aa8.02□□□□□ -1.13
RTN3-201ENST00000338850 A6NJY4 79 aa8.02□□□□□ -1.13
RTN3-201ENST00000338850 A8MTW9 85 aa8.02□□□□□ -1.13
RTN3-201ENST00000338850 VCYO14598 125 aa8.02□□□□□ -1.13
RTN3-201ENST00000338850 DUSP14O95147 198 aaKnown RBP8.02□□□□□ -1.13
RTN3-201ENST00000338850 NSUN5P1Q3KNT7 163 aa8.02□□□□□ -1.13
RTN3-201ENST00000338850 TM4SF20Q53R12 229 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms