RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 S100A2P29034 98 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 CKS2P33552 79 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 NUTF2P61970 127 aaKnown RBP3.01□□□□□ -1.93
MCF2-201ENST00000338585 C11orf72Q8NBR9 251 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 TMEM158Q8WZ71 300 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 PRELID3AQ96N28 172 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 TMEM208Q9BTX3 173 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 MCRIP2Q9BUT9 160 aaKnown RBP3.01□□□□□ -1.93
MCF2-201ENST00000338585 SAMD10Q9BYL1 202 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 U3KQK5 164 aa3.01□□□□□ -1.93
MCF2-201ENST00000338585 TRGV11A0A075B6L2 103 aa3□□□□□ -1.93
MCF2-201ENST00000338585 MGPP08493 103 aa3□□□□□ -1.93
MCF2-201ENST00000338585 LINC00315P59091 139 aa3□□□□□ -1.93
MCF2-201ENST00000338585 PMCHL1Q16048 86 aa3□□□□□ -1.93
MCF2-201ENST00000338585 ZNF876PQ49A33 203 aa3□□□□□ -1.93
MCF2-201ENST00000338585 RNASEKQ6P5S7 137 aaKnown RBP3□□□□□ -1.93
MCF2-201ENST00000338585 NIT1Q86X76 327 aa3□□□□□ -1.93
MCF2-201ENST00000338585 ORMDL3Q8N138 153 aa3□□□□□ -1.93
MCF2-201ENST00000338585 FAM19A2Q8N3H0 131 aa3□□□□□ -1.93
MCF2-201ENST00000338585 CSNK1G2-AS1Q8NCQ2 148 aa3□□□□□ -1.93
MCF2-201ENST00000338585 OR10D4PQ8NGN7 298 aa3□□□□□ -1.93
MCF2-201ENST00000338585 KIF25-AS1Q9Y6Z4 181 aa3□□□□□ -1.93
MCF2-201ENST00000338585 LOC389332A0A1B0GUA5 103 aa3□□□□□ -1.93
MCF2-201ENST00000338585 PMCHP20382 165 aa3□□□□□ -1.93
MCF2-201ENST00000338585 KRTAP10-11P60412 298 aa3□□□□□ -1.93
MCF2-201ENST00000338585 FAM74A4Q5TZK3 123 aa3□□□□□ -1.93
MCF2-201ENST00000338585 SMIM15Q7Z3B0 74 aa3□□□□□ -1.93
MCF2-201ENST00000338585 AP1S3Q96PC3 154 aa3□□□□□ -1.93
MCF2-201ENST00000338585 C20orf144Q9BQM9 153 aa3□□□□□ -1.93
MCF2-201ENST00000338585 DPH3P1Q9H4G8 78 aa3□□□□□ -1.93
MCF2-201ENST00000338585 MRPL16Q9NX20 251 aaKnown RBP3□□□□□ -1.93
MCF2-201ENST00000338585 ESDP10768 282 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 IFI27P40305 119 aaPredicted RBP2.99□□□□□ -1.93
MCF2-201ENST00000338585 ZNF415Q09FC8 603 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 NRACQ8N912 160 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 RPL39LQ96EH5 51 aaKnown RBP2.99□□□□□ -1.93
MCF2-201ENST00000338585 PACRGQ96M98 296 aaPredicted RBP2.99□□□□□ -1.93
MCF2-201ENST00000338585 MDFIQ99750 246 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 LINC00467Q9BRT7 94 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 IGHV3-73A0A0B4J1V6 119 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 TNFRSF6BO95407 300 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 CRYGDP07320 174 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 AMTP48728 403 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 MORN3Q6PF18 240 aaPredicted RBP2.99□□□□□ -1.93
MCF2-201ENST00000338585 ZNF705AQ6ZN79 300 aaPredicted RBP2.99□□□□□ -1.93
MCF2-201ENST00000338585 SYT8Q8NBV8 401 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 RNASE8Q8TDE3 154 aaKnown RBP2.99□□□□□ -1.93
MCF2-201ENST00000338585 RASL10AQ92737 203 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 TMEM18Q96B42 140 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 CSTL1Q9H114 145 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 GOLT1BQ9Y3E0 138 aa2.99□□□□□ -1.93
MCF2-201ENST00000338585 PLAC8L1A1L4L8 177 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 F5H697 171 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 G3V4G9 280 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 M0R2P5 195 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 HSBP1O75506 76 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 PPBPP02775 128 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 LINC00614P0C842 121 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 CDPF1Q6NVV7 123 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 Q6ZWC4 215 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 PRSS3P2Q8NHM4 247 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 IL17DQ8TAD2 202 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 C1QTNF4Q9BXJ3 329 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 NACAE9PAV3 2078 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 PKD1L1Q8TDX9 2849 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 IGHV1-24A0A0C4DH33 117 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 SMIM17P0DL12 118 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 IGHV4-30-4P0DP06 118 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 ZNF56Q15929 161 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 PYY3Q5JQD4 70 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 SUMO4Q6EEV6 95 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 LINC00173Q6ZV60 143 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 FA2HQ7L5A8 372 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 POM121L12Q8N7R1 296 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 DEFB104AQ8WTQ1 72 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 TMEM263Q8WUH6 116 aaKnown RBP2.98□□□□□ -1.93
MCF2-201ENST00000338585 MRAP2Q96G30 205 aa2.98□□□□□ -1.93
MCF2-201ENST00000338585 A0A096LNJ9 63 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 TRGV1A0A0A0MS02 117 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 EMP1P54849 157 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 DEFB135Q30KP9 77 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 Q6ZSN1 163 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 Q6ZTI0 123 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 NEGR1Q7Z3B1 354 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 LINC00518Q8N0U6 118 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 CHCHD1Q96BP2 118 aaKnown RBP2.97□□□□□ -1.93
MCF2-201ENST00000338585 MAP1LC3AQ9H492 121 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 NOP10Q9NPE3 64 aaKnown RBP2.97□□□□□ -1.93
MCF2-201ENST00000338585 AP5S1Q9NUS5 200 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 PGPEP1Q9NXJ5 209 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 Q9UF83 564 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 IGLV2-18A0A075B6J9 118 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 P0DMU3 169 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 FAM231AP0DMU4 169 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 FAM231CP0DMU5 169 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 EGFEM1PQ0D2K5 195 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 RRN3P1Q2M238 152 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 CFAP126Q5VTH2 177 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 UFSP1Q6NVU6 142 aa2.97□□□□□ -1.93
MCF2-201ENST00000338585 C12orf57Q99622 126 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 119.6 ms