RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ATP5J2P56134 94 aa16.43■□□□□ 0.22
SHMT1-201ENST00000316694 ETDBQ3ZM63 59 aa16.43■□□□□ 0.22
SHMT1-201ENST00000316694 KIR2DL4Q99706 377 aa16.43■□□□□ 0.22
SHMT1-201ENST00000316694 PGPEP1Q9NXJ5 209 aa16.43■□□□□ 0.22
SHMT1-201ENST00000316694 IGLV4-69A0A075B6H9 119 aa16.42■□□□□ 0.22
SHMT1-201ENST00000316694 MORN3Q6PF18 240 aaPredicted RBP16.42■□□□□ 0.22
SHMT1-201ENST00000316694 ZNF688P0C7X2 276 aa16.42■□□□□ 0.22
SHMT1-201ENST00000316694 COX6B1P14854 86 aa16.42■□□□□ 0.22
SHMT1-201ENST00000316694 POLR2KP53803 58 aaKnown RBP16.42■□□□□ 0.22
SHMT1-201ENST00000316694 GAGE13Q4V321 117 aa16.42■□□□□ 0.22
SHMT1-201ENST00000316694 MRPL16Q9NX20 251 aaKnown RBP16.42■□□□□ 0.22
SHMT1-201ENST00000316694 IGIPA6NJ69 53 aa16.41■□□□□ 0.22
SHMT1-201ENST00000316694 MSMBP08118 114 aa16.41■□□□□ 0.22
SHMT1-201ENST00000316694 SDHAF1A6NFY7 115 aa16.41■□□□□ 0.22
SHMT1-201ENST00000316694 VCYO14598 125 aa16.41■□□□□ 0.22
SHMT1-201ENST00000316694 USP9XQ93008 2570 aaPredicted RBP16.4■□□□□ 0.22
SHMT1-201ENST00000316694 TRAV12-2A0A075B6T6 113 aa16.4■□□□□ 0.22
SHMT1-201ENST00000316694 PMVKQ15126 192 aa16.4■□□□□ 0.22
SHMT1-201ENST00000316694 PIEZO1Q92508 2521 aa16.4■□□□□ 0.22
SHMT1-201ENST00000316694 CFHR3Q02985 330 aa16.4■□□□□ 0.22
SHMT1-201ENST00000316694 TMEM238LA0A1B0GVL6 79 aa16.39■□□□□ 0.21
SHMT1-201ENST00000316694 A6NJY4 79 aa16.39■□□□□ 0.21
SHMT1-201ENST00000316694 K7EMT4 169 aa16.39■□□□□ 0.21
SHMT1-201ENST00000316694 AVPP01185 164 aa16.39■□□□□ 0.21
SHMT1-201ENST00000316694 RPL32P62910 135 aaKnown RBP16.39■□□□□ 0.21
SHMT1-201ENST00000316694 ZNF256Q9Y2P7 627 aaPredicted RBP16.39■□□□□ 0.21
SHMT1-201ENST00000316694 TMEM238C9JI98 176 aa16.39■□□□□ 0.21
SHMT1-201ENST00000316694 HERVK_113P61574 105 aa16.39■□□□□ 0.21
SHMT1-201ENST00000316694 SFTA2Q6UW10 78 aa16.39■□□□□ 0.21
SHMT1-201ENST00000316694 MDFICQ9P1T7 246 aa16.38■□□□□ 0.21
SHMT1-201ENST00000316694 LINC01549A6NIU2 74 aa16.38■□□□□ 0.21
SHMT1-201ENST00000316694 NDUFS8O00217 210 aa16.38■□□□□ 0.21
SHMT1-201ENST00000316694 TMEM170BQ5T4T1 132 aa16.38■□□□□ 0.21
SHMT1-201ENST00000316694 C10orf99Q6UWK7 81 aa16.38■□□□□ 0.21
SHMT1-201ENST00000316694 PAPPA-AS1Q5QFB9 102 aa16.37■□□□□ 0.21
SHMT1-201ENST00000316694 IGSF10Q6WRI0 2623 aa16.37■□□□□ 0.21
SHMT1-201ENST00000316694 ZNF56Q15929 161 aa16.37■□□□□ 0.21
SHMT1-201ENST00000316694 TMEM141Q96I45 108 aa16.37■□□□□ 0.21
SHMT1-201ENST00000316694 TSSC4Q9Y5U2 329 aaPredicted RBP16.37■□□□□ 0.21
SHMT1-201ENST00000316694 PRO0461Q9UI25 63 aa16.36■□□□□ 0.21
SHMT1-201ENST00000316694 J3QR89 54 aa16.36■□□□□ 0.21
SHMT1-201ENST00000316694 APOMO95445 188 aa16.36■□□□□ 0.21
SHMT1-201ENST00000316694 GTSF1LQ9H1H1 148 aa16.36■□□□□ 0.21
SHMT1-201ENST00000316694 SORL1Q92673 2214 aa16.35■□□□□ 0.21
SHMT1-201ENST00000316694 IGHV3-16A0A0C4DH30 117 aa16.35■□□□□ 0.21
SHMT1-201ENST00000316694 SAMD13Q5VXD3 122 aa16.35■□□□□ 0.21
SHMT1-201ENST00000316694 NRGNQ92686 78 aa16.35■□□□□ 0.21
SHMT1-201ENST00000316694 TIMM17AQ99595 171 aa16.35■□□□□ 0.21
SHMT1-201ENST00000316694 DOPEY1Q5JWR5 2465 aa16.35■□□□□ 0.21
SHMT1-201ENST00000316694 PSMB8P28062 276 aa16.35■□□□□ 0.21
SHMT1-201ENST00000316694 LOC107984156A0A0G2JMH3 177 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 TRBV27A0A0K0K1C4 114 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 LGALS9O00182 355 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 UBE2D1P51668 147 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 TSPEAR-AS2P59090 65 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 ARL17AQ8IVW1 177 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 Q8N1Y9 231 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 ZNRF2Q8NHG8 242 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 SPAG8Q99932 426 aaPredicted RBP16.34■□□□□ 0.21
SHMT1-201ENST00000316694 DOPEY2Q9Y3R5 2298 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 A0A0J9YY99 117 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 C9orf85Q96MD7 179 aa16.34■□□□□ 0.21
SHMT1-201ENST00000316694 IGHV4-59P01825 116 aa16.33■□□□□ 0.2
SHMT1-201ENST00000316694 SNRPD3P62318 126 aaKnown RBP16.33■□□□□ 0.2
SHMT1-201ENST00000316694 SPINK13Q1W4C9 94 aa16.33■□□□□ 0.2
SHMT1-201ENST00000316694 A0A0J9YX75 114 aa16.33■□□□□ 0.2
SHMT1-201ENST00000316694 TSPAN13O95857 204 aa16.33■□□□□ 0.2
SHMT1-201ENST00000316694 SYT8Q8NBV8 401 aa16.33■□□□□ 0.2
SHMT1-201ENST00000316694 GAGE12HA6NDE8 117 aa16.32■□□□□ 0.2
SHMT1-201ENST00000316694 OPRPNQ99935 248 aaPredicted RBP16.32■□□□□ 0.2
SHMT1-201ENST00000316694 AZU1P20160 251 aa16.31■□□□□ 0.2
SHMT1-201ENST00000316694 INSL3P51460 131 aa16.31■□□□□ 0.2
SHMT1-201ENST00000316694 ZNF876PQ49A33 203 aa16.31■□□□□ 0.2
SHMT1-201ENST00000316694 ZANQ9Y493 2812 aa16.31■□□□□ 0.2
SHMT1-201ENST00000316694 TRBV6-5A0A0K0K1A5 114 aa16.3■□□□□ 0.2
SHMT1-201ENST00000316694 B4DSR2 109 aa16.3■□□□□ 0.2
SHMT1-201ENST00000316694 M0QY20 66 aa16.3■□□□□ 0.2
SHMT1-201ENST00000316694 PSMB2P49721 201 aa16.3■□□□□ 0.2
SHMT1-201ENST00000316694 DLX4Q92988 240 aaPredicted RBP16.3■□□□□ 0.2
SHMT1-201ENST00000316694 SIGMAR1Q99720 223 aa16.3■□□□□ 0.2
SHMT1-201ENST00000316694 MYO18BQ8IUG5 2567 aa16.3■□□□□ 0.2
SHMT1-201ENST00000316694 SMAGPQ0VAQ4 97 aa16.29■□□□□ 0.2
SHMT1-201ENST00000316694 DEFB112Q30KQ8 113 aa16.29■□□□□ 0.2
SHMT1-201ENST00000316694 USP9YO00507 2555 aaPredicted RBP16.29■□□□□ 0.2
SHMT1-201ENST00000316694 IGHV1OR15-1A0A075B7D0 117 aa16.28■□□□□ 0.2
SHMT1-201ENST00000316694 SYNJ2BPP57105 145 aa16.28■□□□□ 0.2
SHMT1-201ENST00000316694 DUX5Q96PT3 197 aa16.28■□□□□ 0.2
SHMT1-201ENST00000316694 ODF3Q96PU9 254 aa16.28■□□□□ 0.2
SHMT1-201ENST00000316694 NDUFA11Q86Y39 141 aa16.28■□□□□ 0.2
SHMT1-201ENST00000316694 CACNA1AO00555 2505 aa16.28■□□□□ 0.2
SHMT1-201ENST00000316694 CREBBPQ92793 2442 aa16.28■□□□□ 0.2
SHMT1-201ENST00000316694 J3QQQ9 107 aa16.27■□□□□ 0.2
SHMT1-201ENST00000316694 K7EQG2 157 aa16.27■□□□□ 0.2
SHMT1-201ENST00000316694 CENPEQ02224 2701 aa16.27■□□□□ 0.2
SHMT1-201ENST00000316694 LGALS3P17931 250 aaKnown RBP16.27■□□□□ 0.19
SHMT1-201ENST00000316694 IGHV3-30P01768 117 aa16.26■□□□□ 0.19
SHMT1-201ENST00000316694 IGHV3-30-5P0DP03 117 aa16.26■□□□□ 0.19
SHMT1-201ENST00000316694 CFAP126Q5VTH2 177 aa16.26■□□□□ 0.19
SHMT1-201ENST00000316694 TRPT1Q86TN4 253 aaKnown RBP16.26■□□□□ 0.19
SHMT1-201ENST00000316694 POLQO75417 2590 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms