RNA–Protein interactions for RNA: ENST00000308354.11

PDLIM2-202, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,236 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-202ENST00000308354 HSBP1L1C9JCN9 74 aa16.55■□□□□ 0.24
PDLIM2-202ENST00000308354 RBMY1A1P0DJD3 496 aaKnown RBP16.55■□□□□ 0.24
PDLIM2-202ENST00000308354 RBMY1CP0DJD4 496 aa16.55■□□□□ 0.24
PDLIM2-202ENST00000308354 RBMY1FQ15415 496 aaKnown RBP16.55■□□□□ 0.24
PDLIM2-202ENST00000308354 ODF3L2Q3SX64 289 aa16.55■□□□□ 0.24
PDLIM2-202ENST00000308354 C18orf15Q96N68 181 aa16.55■□□□□ 0.24
PDLIM2-202ENST00000308354 F8P00451 2351 aa16.55■□□□□ 0.24
PDLIM2-202ENST00000308354 FCER1GP30273 86 aa16.55■□□□□ 0.24
PDLIM2-202ENST00000308354 MDFICQ9P1T7 246 aa16.55■□□□□ 0.24
PDLIM2-202ENST00000308354 Q8N1Y9 231 aa16.54■□□□□ 0.24
PDLIM2-202ENST00000308354 JMJD1CQ15652 2540 aa16.54■□□□□ 0.24
PDLIM2-202ENST00000308354 HTN1P15515 57 aa16.54■□□□□ 0.24
PDLIM2-202ENST00000308354 TRAV25A0A0B4J276 109 aa16.53■□□□□ 0.24
PDLIM2-202ENST00000308354 PRSS47A8MTI9 375 aa16.53■□□□□ 0.24
PDLIM2-202ENST00000308354 DEFB125Q8N687 156 aa16.53■□□□□ 0.24
PDLIM2-202ENST00000308354 TMEM158Q8WZ71 300 aa16.53■□□□□ 0.24
PDLIM2-202ENST00000308354 AP1S3Q96PC3 154 aa16.53■□□□□ 0.24
PDLIM2-202ENST00000308354 GOLT1BQ9Y3E0 138 aa16.53■□□□□ 0.24
PDLIM2-202ENST00000308354 IGHV1OR15-1A0A075B7D0 117 aa16.53■□□□□ 0.24
PDLIM2-202ENST00000308354 NXPH4O95158 308 aa16.53■□□□□ 0.24
PDLIM2-202ENST00000308354 MGPP08493 103 aa16.53■□□□□ 0.24
PDLIM2-202ENST00000308354 TENM1Q9UKZ4 2725 aa16.52■□□□□ 0.24
PDLIM2-202ENST00000308354 TCAPO15273 167 aa16.52■□□□□ 0.24
PDLIM2-202ENST00000308354 PRM2P04554 102 aa16.52■□□□□ 0.24
PDLIM2-202ENST00000308354 NUTF2P61970 127 aaKnown RBP16.52■□□□□ 0.24
PDLIM2-202ENST00000308354 LGALS9BQ3B8N2 356 aa16.52■□□□□ 0.24
PDLIM2-202ENST00000308354 LGALS9CQ6DKI2 356 aa16.52■□□□□ 0.24
PDLIM2-202ENST00000308354 RASL10AQ92737 203 aa16.51■□□□□ 0.23
PDLIM2-202ENST00000308354 IGHV3-16A0A0C4DH30 117 aa16.51■□□□□ 0.23
PDLIM2-202ENST00000308354 RPL39LQ96EH5 51 aaKnown RBP16.51■□□□□ 0.23
PDLIM2-202ENST00000308354 JPT2Q9H910 190 aa16.51■□□□□ 0.23
PDLIM2-202ENST00000308354 A8MTW9 85 aa16.5■□□□□ 0.23
PDLIM2-202ENST00000308354 NDUFA11Q86Y39 141 aa16.5■□□□□ 0.23
PDLIM2-202ENST00000308354 MRPS16Q9Y3D3 137 aaKnown RBP16.5■□□□□ 0.23
PDLIM2-202ENST00000308354 LAGE3Q14657 143 aa16.49■□□□□ 0.23
PDLIM2-202ENST00000308354 SMIM2Q9BVW6 85 aa16.49■□□□□ 0.23
PDLIM2-202ENST00000308354 OR11H12B2RN74 326 aa16.48■□□□□ 0.23
PDLIM2-202ENST00000308354 CBY3A6NI87 242 aa16.47■□□□□ 0.23
PDLIM2-202ENST00000308354 IGLV1-51P01701 117 aa16.47■□□□□ 0.23
PDLIM2-202ENST00000308354 PF4P02776 101 aa16.47■□□□□ 0.23
PDLIM2-202ENST00000308354 SUMO2P61956 95 aaKnown RBP16.47■□□□□ 0.23
PDLIM2-202ENST00000308354 KIF25-AS1Q9Y6Z4 181 aa16.47■□□□□ 0.23
PDLIM2-202ENST00000308354 VWFP04275 2813 aa16.47■□□□□ 0.23
PDLIM2-202ENST00000308354 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.47■□□□□ 0.23
PDLIM2-202ENST00000308354 DKK2Q9UBU2 259 aa16.47■□□□□ 0.23
PDLIM2-202ENST00000308354 SMIM17P0DL12 118 aa16.46■□□□□ 0.23
PDLIM2-202ENST00000308354 LINC00315P59091 139 aa16.46■□□□□ 0.23
PDLIM2-202ENST00000308354 SLC25A34Q6PIV7 304 aa16.46■□□□□ 0.23
PDLIM2-202ENST00000308354 C9orf85Q96MD7 179 aa16.46■□□□□ 0.23
PDLIM2-202ENST00000308354 STHQ8IWL8 128 aa16.46■□□□□ 0.23
PDLIM2-202ENST00000308354 WFDC10AQ9H1F0 79 aa16.46■□□□□ 0.23
PDLIM2-202ENST00000308354 A0A087WWL8 130 aa16.45■□□□□ 0.22
PDLIM2-202ENST00000308354 ATRQ13535 2644 aa16.45■□□□□ 0.22
PDLIM2-202ENST00000308354 HINT1P49773 126 aaPredicted RBP16.45■□□□□ 0.22
PDLIM2-202ENST00000308354 ANKRD39Q53RE8 183 aa16.45■□□□□ 0.22
PDLIM2-202ENST00000308354 STPG4Q8N801 248 aa16.45■□□□□ 0.22
PDLIM2-202ENST00000308354 C20orf78Q9BR46 151 aa16.45■□□□□ 0.22
PDLIM2-202ENST00000308354 XCL2Q9UBD3 114 aa16.45■□□□□ 0.22
PDLIM2-202ENST00000308354 POM121L12Q8N7R1 296 aa16.44■□□□□ 0.22
PDLIM2-202ENST00000308354 PRSS1P07477 247 aa16.43■□□□□ 0.22
PDLIM2-202ENST00000308354 TCTAP57738 103 aa16.43■□□□□ 0.22
PDLIM2-202ENST00000308354 NUDT3O95989 172 aa16.43■□□□□ 0.22
PDLIM2-202ENST00000308354 SPATA3Q8NHX4 192 aa16.43■□□□□ 0.22
PDLIM2-202ENST00000308354 ODF1Q14990 250 aa16.42■□□□□ 0.22
PDLIM2-202ENST00000308354 LINC00482Q8N8I6 264 aa16.42■□□□□ 0.22
PDLIM2-202ENST00000308354 COL5A1-AS1Q5SY13 56 aa16.42■□□□□ 0.22
PDLIM2-202ENST00000308354 FAM74A4Q5TZK3 123 aa16.42■□□□□ 0.22
PDLIM2-202ENST00000308354 NOTCH3Q9UM47 2321 aa16.42■□□□□ 0.22
PDLIM2-202ENST00000308354 TRGV11A0A075B6L2 103 aa16.41■□□□□ 0.22
PDLIM2-202ENST00000308354 COX8AP10176 69 aa16.41■□□□□ 0.22
PDLIM2-202ENST00000308354 LINC01587Q99440 93 aa16.41■□□□□ 0.22
PDLIM2-202ENST00000308354 ATP5LO75964 103 aa16.4■□□□□ 0.22
PDLIM2-202ENST00000308354 SUMO4Q6EEV6 95 aa16.4■□□□□ 0.22
PDLIM2-202ENST00000308354 TRPT1Q86TN4 253 aaKnown RBP16.4■□□□□ 0.22
PDLIM2-202ENST00000308354 ZNF876PQ49A33 203 aa16.39■□□□□ 0.22
PDLIM2-202ENST00000308354 TEP1Q99973 2627 aaKnown RBP16.39■□□□□ 0.21
PDLIM2-202ENST00000308354 BAHCC1Q9P281 2608 aa16.39■□□□□ 0.21
PDLIM2-202ENST00000308354 F5H697 171 aa16.39■□□□□ 0.21
PDLIM2-202ENST00000308354 INSP01308 110 aa16.39■□□□□ 0.21
PDLIM2-202ENST00000308354 ORMDL2Q53FV1 153 aa16.39■□□□□ 0.21
PDLIM2-202ENST00000308354 CSTL1Q9H114 145 aa16.39■□□□□ 0.21
PDLIM2-202ENST00000308354 IGHV3OR16-12A0A075B7B8 117 aa16.38■□□□□ 0.21
PDLIM2-202ENST00000308354 PPP1R17O96001 155 aa16.38■□□□□ 0.21
PDLIM2-202ENST00000308354 NEGR1Q7Z3B1 354 aa16.38■□□□□ 0.21
PDLIM2-202ENST00000308354 SYT8Q8NBV8 401 aa16.38■□□□□ 0.21
PDLIM2-202ENST00000308354 BEAN1Q3B7T3 259 aa16.38■□□□□ 0.21
PDLIM2-202ENST00000308354 ZMAT4Q9H898 229 aa16.37■□□□□ 0.21
PDLIM2-202ENST00000308354 C19orf73Q9NVV2 129 aa16.37■□□□□ 0.21
PDLIM2-202ENST00000308354 MPV17L2Q567V2 206 aa16.37■□□□□ 0.21
PDLIM2-202ENST00000308354 FGF6P10767 208 aa16.36■□□□□ 0.21
PDLIM2-202ENST00000308354 CLUHP3Q96NS8 147 aa16.36■□□□□ 0.21
PDLIM2-202ENST00000308354 TMEM208Q9BTX3 173 aa16.36■□□□□ 0.21
PDLIM2-202ENST00000308354 CYSRT1A8MQ03 144 aa16.35■□□□□ 0.21
PDLIM2-202ENST00000308354 K7EMI3 77 aa16.35■□□□□ 0.21
PDLIM2-202ENST00000308354 CRYGDP07320 174 aa16.35■□□□□ 0.21
PDLIM2-202ENST00000308354 RPL35AP18077 110 aaKnown RBP16.35■□□□□ 0.21
PDLIM2-202ENST00000308354 TOMM6Q96B49 74 aa16.35■□□□□ 0.21
PDLIM2-202ENST00000308354 C2orf91Q6ZV80 131 aa16.34■□□□□ 0.21
PDLIM2-202ENST00000308354 C1orf158Q8N1D5 194 aa16.34■□□□□ 0.21
PDLIM2-202ENST00000308354 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms