RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 XCL1P47992 114 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 C5orf64Q2M2E5 130 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 SPRR3Q9UBC9 169 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 VCANP13611 3396 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 NDUFA7O95182 113 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 DAND5Q8N907 189 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 ZMAT4Q9H898 229 aa5.02□□□□□ -1.61
VPS35-201ENST00000299138 SDHAF1A6NFY7 115 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 CELA3BP08861 270 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 LINC00528Q8N1L1 170 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 IGKV1D-37A0A075B6S9 117 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 CTSGP08311 255 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 C15orf32Q32M92 178 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 ZNF491Q8N8L2 437 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 C9orf106Q8NAJ2 232 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 NCOA6Q14686 2063 aaPredicted RBP5.01□□□□□ -1.61
VPS35-201ENST00000299138 TRBV10-2A0A0K0K1G8 114 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 TMEM178BH3BS89 294 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 IGHV4-30-4P0DP06 118 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 IGHV4-31P0DP07 118 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 ENHOQ6UWT2 76 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 Q9HAA7 133 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 UNC13CQ8NB66 2214 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 WT1P19544 449 aaPredicted RBP5.01□□□□□ -1.61
VPS35-201ENST00000299138 FXYD2P54710 66 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 SERP1Q9Y6X1 66 aa5.01□□□□□ -1.61
VPS35-201ENST00000299138 ATG2AQ2TAZ0 1938 aa5□□□□□ -1.61
VPS35-201ENST00000299138 IGHV7-4-1A0A0J9YVY3 117 aa5□□□□□ -1.61
VPS35-201ENST00000299138 ANGP03950 147 aaKnown RBP5□□□□□ -1.61
VPS35-201ENST00000299138 LINC00643Q86TS7 51 aa5□□□□□ -1.61
VPS35-201ENST00000299138 LECT2O14960 151 aa5□□□□□ -1.61
VPS35-201ENST00000299138 Q6Q795 121 aa5□□□□□ -1.61
VPS35-201ENST00000299138 C2orf91Q6ZV80 131 aa5□□□□□ -1.61
VPS35-201ENST00000299138 OPRPNQ99935 248 aaPredicted RBP5□□□□□ -1.61
VPS35-201ENST00000299138 HTTP42858 3142 aa5□□□□□ -1.61
VPS35-201ENST00000299138 ATP1A1-AS1Q5TC04 95 aa5□□□□□ -1.61
VPS35-201ENST00000299138 WFDC10BQ8IUB3 73 aa5□□□□□ -1.61
VPS35-201ENST00000299138 LINC01560Q8TB33 94 aa5□□□□□ -1.61
VPS35-201ENST00000299138 FANCD2OSQ96PS1 177 aa5□□□□□ -1.61
VPS35-201ENST00000299138 TRBV27A0A0K0K1C4 114 aa5□□□□□ -1.61
VPS35-201ENST00000299138 NPBQ8NG41 125 aa5□□□□□ -1.61
VPS35-201ENST00000299138 RITA1Q96K30 269 aa5□□□□□ -1.61
VPS35-201ENST00000299138 PRUNE2Q8WUY3 3088 aa5□□□□□ -1.61
VPS35-201ENST00000299138 H3BT86 120 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 IGKV1-16P04430 117 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 SEM1Q6ZVN7 128 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 KLHL30-AS1Q8NEE0 82 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 FAM168AQ92567 244 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 YLPM1P49750 1951 aaKnown RBP4.99□□□□□ -1.61
VPS35-201ENST00000299138 TEX49A0A1B0GTD5 131 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 DEFB112Q30KQ8 113 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 PLA2G2CQ5R387 149 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 SND1-IT1Q9HBX3 110 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 ZDBF2Q9HCK1 2354 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 H3BUA1 57 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 I3L2K1 104 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 IGLV2-23P01705 113 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 MLANAQ16655 118 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 KLK9Q2XQG4 91 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 LYRM9A8MSI8 78 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 BPY2O14599 106 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 SPINK13Q1W4C9 94 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 GDF5OSQ5U4N7 250 aa4.99□□□□□ -1.61
VPS35-201ENST00000299138 TNRC6BQ9UPQ9 1833 aaKnown RBP4.99□□□□□ -1.61
VPS35-201ENST00000299138 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.99□□□□□ -1.61
VPS35-201ENST00000299138 IGKV2-29A2NJV5 120 aaPredicted RBP4.99□□□□□ -1.61
VPS35-201ENST00000299138 FAM110DQ8TAY7 271 aaPredicted RBP4.99□□□□□ -1.61
VPS35-201ENST00000299138 REV3LO60673 3130 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 H0YGX0 51 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 IGKV1-17P01599 117 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 IGLV1-47P01700 117 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 TMEM200BQ69YZ2 307 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 LRRC75A-AS1Q8N1F1 130 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 RNASE6Q93091 150 aaKnown RBP4.98□□□□□ -1.61
VPS35-201ENST00000299138 JMJD7-PLA2G4BH0Y9G9 81 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 ODF1Q14990 250 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 URB1-AS1Q96HZ7 61 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 XCL2Q9UBD3 114 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 LOXP28300 417 aaPredicted RBP4.98□□□□□ -1.61
VPS35-201ENST00000299138 PSPHP1O15172 72 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 C5orf38Q86SI9 138 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 BUB1B-PAK6H3BSN5 160 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 ARFGEF3Q5TH69 2177 aa4.98□□□□□ -1.61
VPS35-201ENST00000299138 EML5Q05BV3 1969 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 PIK3CD-AS1Q5SR53 167 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 RNF114Q9Y508 228 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 Q6ZQT7 251 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 NACAE9PAV3 2078 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 IGKV2D-24A0A075B6R9 120 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 TRBV7-1A0A0A6YYK4 115 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 RNF223E7ERA6 249 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 ATP5EP56381 51 aaPredicted RBP4.97□□□□□ -1.61
VPS35-201ENST00000299138 Q8N1Y9 231 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 SERP2Q8N6R1 65 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 TTTY13Q9BZ97 58 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 AHCTF1Q8WYP5 2266 aa4.97□□□□□ -1.61
VPS35-201ENST00000299138 PCNX3Q9H6A9 2034 aa4.96□□□□□ -1.61
VPS35-201ENST00000299138 BRI3O95415 125 aa4.96□□□□□ -1.61
VPS35-201ENST00000299138 LINC00173Q6ZV60 143 aa4.96□□□□□ -1.61
VPS35-201ENST00000299138 C17orf77Q96MU5 243 aa4.96□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms