RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 UBE2BP63146 152 aa9.25□□□□□ -0.93
SHROOM3-201ENST00000296043 BRD3OSQ6XYD6 125 aa9.25□□□□□ -0.93
SHROOM3-201ENST00000296043 A0A0J9YXV3 536 aa9.25□□□□□ -0.93
SHROOM3-201ENST00000296043 SAP25Q8TEE9 199 aa9.24□□□□□ -0.93
SHROOM3-201ENST00000296043 TPSG1Q9NRR2 321 aa9.24□□□□□ -0.93
SHROOM3-201ENST00000296043 WT1-ASQ06250 92 aa9.24□□□□□ -0.93
SHROOM3-201ENST00000296043 ZFP36L1Q07352 338 aaKnown RBP9.24□□□□□ -0.93
SHROOM3-201ENST00000296043 PMAIP1Q13794 54 aa9.24□□□□□ -0.93
SHROOM3-201ENST00000296043 ATP5EP56381 51 aaPredicted RBP9.24□□□□□ -0.93
SHROOM3-201ENST00000296043 Q6ZQT7 251 aa9.24□□□□□ -0.93
SHROOM3-201ENST00000296043 PRR4Q16378 134 aa9.24□□□□□ -0.93
SHROOM3-201ENST00000296043 SEC61GP60059 68 aa9.24□□□□□ -0.93
SHROOM3-201ENST00000296043 IGKV4-1P06312 121 aa9.23□□□□□ -0.93
SHROOM3-201ENST00000296043 XGP55808 180 aa9.23□□□□□ -0.93
SHROOM3-201ENST00000296043 RNF5Q99942 180 aa9.23□□□□□ -0.93
SHROOM3-201ENST00000296043 ETDCA0A1B0GVM5 59 aa9.23□□□□□ -0.93
SHROOM3-201ENST00000296043 C5orf38Q86SI9 138 aa9.23□□□□□ -0.93
SHROOM3-201ENST00000296043 VPREB3Q9UKI3 123 aa9.23□□□□□ -0.93
SHROOM3-201ENST00000296043 PIK3CD-AS1Q5SR53 167 aa9.23□□□□□ -0.93
SHROOM3-201ENST00000296043 SERP2Q8N6R1 65 aa9.23□□□□□ -0.93
SHROOM3-201ENST00000296043 FHL1Q13642 323 aa9.22□□□□□ -0.93
SHROOM3-201ENST00000296043 RPL18AQ02543 176 aaKnown RBP9.22□□□□□ -0.93
SHROOM3-201ENST00000296043 LYPD2Q6UXB3 125 aa9.22□□□□□ -0.93
SHROOM3-201ENST00000296043 FLVCR1-AS1Q8TAF5 88 aa9.22□□□□□ -0.93
SHROOM3-201ENST00000296043 NFE4Q86UQ8 179 aa9.22□□□□□ -0.93
SHROOM3-201ENST00000296043 C11orf86A6NJI1 115 aa9.22□□□□□ -0.93
SHROOM3-201ENST00000296043 CLPSP04118 112 aa9.21□□□□□ -0.93
SHROOM3-201ENST00000296043 PIFOQ8TCI5 191 aa9.21□□□□□ -0.93
SHROOM3-201ENST00000296043 ZNF503Q96F45 646 aa9.21□□□□□ -0.93
SHROOM3-201ENST00000296043 H3BUX3 64 aa9.21□□□□□ -0.93
SHROOM3-201ENST00000296043 IGHV4-59P01825 116 aa9.21□□□□□ -0.93
SHROOM3-201ENST00000296043 SP7Q8TDD2 431 aaPredicted RBP9.21□□□□□ -0.93
SHROOM3-201ENST00000296043 DAZ2Q13117 558 aaKnown RBP9.21□□□□□ -0.94
SHROOM3-201ENST00000296043 DAZ4Q86SG3 579 aaKnown RBP9.21□□□□□ -0.94
SHROOM3-201ENST00000296043 DAZ3Q9NR90 486 aaKnown RBP9.21□□□□□ -0.94
SHROOM3-201ENST00000296043 TOMM6Q96B49 74 aa9.21□□□□□ -0.94
SHROOM3-201ENST00000296043 G3V318 75 aa9.21□□□□□ -0.94
SHROOM3-201ENST00000296043 ATP6V0E1O15342 81 aa9.21□□□□□ -0.94
SHROOM3-201ENST00000296043 C1orf147Q96MC9 270 aaPredicted RBP9.21□□□□□ -0.94
SHROOM3-201ENST00000296043 ATP5EP2Q5VTU8 51 aa9.21□□□□□ -0.94
SHROOM3-201ENST00000296043 MRPS12O15235 138 aaKnown RBP9.2□□□□□ -0.94
SHROOM3-201ENST00000296043 UBE2E1P51965 193 aa9.2□□□□□ -0.94
SHROOM3-201ENST00000296043 RNASE6Q93091 150 aaKnown RBP9.2□□□□□ -0.94
SHROOM3-201ENST00000296043 IL15RAQ13261 267 aa9.2□□□□□ -0.94
SHROOM3-201ENST00000296043 TLN1Q9Y490 2541 aaKnown RBP9.2□□□□□ -0.94
SHROOM3-201ENST00000296043 ZNF833PQ6ZTB9 187 aa9.2□□□□□ -0.94
SHROOM3-201ENST00000296043 C2orf70A6NJV1 201 aa9.2□□□□□ -0.94
SHROOM3-201ENST00000296043 MINOS1Q5TGZ0 78 aa9.2□□□□□ -0.94
SHROOM3-201ENST00000296043 MINOS1-NBL1R4GNA1 71 aa9.2□□□□□ -0.94
SHROOM3-201ENST00000296043 JMJD7-PLA2G4BH0Y9G9 81 aa9.19□□□□□ -0.94
SHROOM3-201ENST00000296043 NDUFB1O75438 58 aa9.19□□□□□ -0.94
SHROOM3-201ENST00000296043 FAM19A5Q7Z5A7 132 aaPredicted RBP9.19□□□□□ -0.94
SHROOM3-201ENST00000296043 CMC4P56277 68 aaPredicted RBP9.19□□□□□ -0.94
SHROOM3-201ENST00000296043 ZNF491Q8N8L2 437 aa9.19□□□□□ -0.94
SHROOM3-201ENST00000296043 MRPL53Q96EL3 112 aaKnown RBP9.19□□□□□ -0.94
SHROOM3-201ENST00000296043 IGLV10-54A0A075B6I4 117 aa9.19□□□□□ -0.94
SHROOM3-201ENST00000296043 UBE2AP49459 152 aa9.19□□□□□ -0.94
SHROOM3-201ENST00000296043 INSL3P51460 131 aa9.19□□□□□ -0.94
SHROOM3-201ENST00000296043 H0Y9J4 135 aa9.19□□□□□ -0.94
SHROOM3-201ENST00000296043 BPY2O14599 106 aa9.18□□□□□ -0.94
SHROOM3-201ENST00000296043 PROK2Q9HC23 129 aa9.18□□□□□ -0.94
SHROOM3-201ENST00000296043 LRCOL1A6NCL2 159 aa9.18□□□□□ -0.94
SHROOM3-201ENST00000296043 TMEM256-PLSCR3K7ERE1 68 aa9.18□□□□□ -0.94
SHROOM3-201ENST00000296043 ZNF672Q499Z4 452 aaPredicted RBP9.18□□□□□ -0.94
SHROOM3-201ENST00000296043 HIGD2BQ4VC39 106 aa9.18□□□□□ -0.94
SHROOM3-201ENST00000296043 MBD3L2Q8NHZ7 208 aaPredicted RBP9.18□□□□□ -0.94
SHROOM3-201ENST00000296043 MIAQ16674 131 aa9.18□□□□□ -0.94
SHROOM3-201ENST00000296043 K7EM74 188 aa9.18□□□□□ -0.94
SHROOM3-201ENST00000296043 LMO1P25800 156 aa9.18□□□□□ -0.94
SHROOM3-201ENST00000296043 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 PRR20EP86478 221 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 PRR20CP86479 221 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 PRR20DP86480 221 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 PRR20BP86481 221 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 PRR20AP86496 221 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 SOSTDC1Q6X4U4 206 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 LOXP28300 417 aaPredicted RBP9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 C9orf47Q6ZRZ4 202 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 A0A0J9YWU9 116 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 SLPIP03973 132 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 COX7CP15954 63 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 TIMM17AQ99595 171 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 PKD1L2Q7Z442 2459 aa9.17□□□□□ -0.94
SHROOM3-201ENST00000296043 LY6HO94772 140 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 BLCAPP62952 87 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 NOP10Q9NPE3 64 aaKnown RBP9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 USP17L23D6RBM5 183 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 H3BQ85 93 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 GP9P14770 177 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 COX7A2LO14548 114 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 TRIAP1O43715 76 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 FAM110DQ8TAY7 271 aaPredicted RBP9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 COL5A1P20908 1838 aaPredicted RBP9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 GNLYP22749 145 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 AGPAT4-IT1Q9H0P7 198 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 RUSC1-AS1Q66K80 236 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 LRP4O75096 1905 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 HIVEP2P31629 2446 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 PTPRSQ13332 1948 aa9.16□□□□□ -0.94
SHROOM3-201ENST00000296043 IGHV4-30-2A0A087WSY4 118 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms