RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 TRAV12-3A0A0B4J271 114 aa20.58■□□□□ 0.89
CBX4-201ENST00000269397 FAM159AQ6UWV7 190 aa20.58■□□□□ 0.89
CBX4-201ENST00000269397 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP20.58■□□□□ 0.882e-8■■■■■ 39.6
CBX4-201ENST00000269397 POLR2KP53803 58 aaKnown RBP20.58■□□□□ 0.88
CBX4-201ENST00000269397 HERVK_113P61574 105 aa20.58■□□□□ 0.88
CBX4-201ENST00000269397 FHL3Q13643 280 aa20.58■□□□□ 0.88
CBX4-201ENST00000269397 OPRPNQ99935 248 aaPredicted RBP20.58■□□□□ 0.88
CBX4-201ENST00000269397 ZNF256Q9Y2P7 627 aaPredicted RBP20.58■□□□□ 0.88
CBX4-201ENST00000269397 SDHAF1A6NFY7 115 aa20.57■□□□□ 0.88
CBX4-201ENST00000269397 UBE2D3P61077 147 aa20.56■□□□□ 0.88
CBX4-201ENST00000269397 UBE2D2P62837 147 aa20.56■□□□□ 0.88
CBX4-201ENST00000269397 BLCAPP62952 87 aa20.56■□□□□ 0.88
CBX4-201ENST00000269397 APRG1Q8IVJ8 170 aa20.56■□□□□ 0.88
CBX4-201ENST00000269397 KIR2DL4Q99706 377 aa20.56■□□□□ 0.88
CBX4-201ENST00000269397 SORL1Q92673 2214 aa20.56■□□□□ 0.88
CBX4-201ENST00000269397 TCL1BO95988 128 aa20.56■□□□□ 0.88
CBX4-201ENST00000269397 CDIP1Q9H305 208 aa20.56■□□□□ 0.88
CBX4-201ENST00000269397 CFC1BP0CG36 223 aa20.55■□□□□ 0.88
CBX4-201ENST00000269397 CFC1P0CG37 223 aa20.55■□□□□ 0.88
CBX4-201ENST00000269397 IGHV4OR15-8A0A075B7B6 117 aa20.55■□□□□ 0.88
CBX4-201ENST00000269397 A0A087WW49 117 aa20.55■□□□□ 0.88
CBX4-201ENST00000269397 A0A1B0GV72 72 aa20.55■□□□□ 0.88
CBX4-201ENST00000269397 IGKV3-20P01619 116 aa20.55■□□□□ 0.88
CBX4-201ENST00000269397 SPG11Q96JI7 2443 aa20.55■□□□□ 0.88
CBX4-201ENST00000269397 NCOR2Q9Y618 2525 aa20.54■□□□□ 0.88
CBX4-201ENST00000269397 IGHV1-69DA0A0B4J2H0 117 aa20.54■□□□□ 0.88
CBX4-201ENST00000269397 POM121L12Q8N7R1 296 aa20.54■□□□□ 0.88
CBX4-201ENST00000269397 NXPH4O95158 308 aa20.54■□□□□ 0.88
CBX4-201ENST00000269397 IGHV3-30P01768 117 aa20.54■□□□□ 0.88
CBX4-201ENST00000269397 IGHV3-30-5P0DP03 117 aa20.54■□□□□ 0.88
CBX4-201ENST00000269397 VCYO14598 125 aa20.53■□□□□ 0.88
CBX4-201ENST00000269397 IGHV1-69P01742 117 aa20.53■□□□□ 0.88
CBX4-201ENST00000269397 IGHV4-38-2P0DP08 117 aa20.52■□□□□ 0.88
CBX4-201ENST00000269397 CKS1BP61024 79 aa20.52■□□□□ 0.88
CBX4-201ENST00000269397 CHD8Q9HCK8 2581 aa20.52■□□□□ 0.88
CBX4-201ENST00000269397 IGHV3-64A0A075B6Q5 118 aa20.52■□□□□ 0.88
CBX4-201ENST00000269397 CRIP2P52943 208 aaPredicted RBP20.52■□□□□ 0.88
CBX4-201ENST00000269397 CARD19Q96LW7 228 aa20.52■□□□□ 0.88
CBX4-201ENST00000269397 CELSR2Q9HCU4 2923 aa20.52■□□□□ 0.88
CBX4-201ENST00000269397 KLLNB2CW77 178 aa20.51■□□□□ 0.87
CBX4-201ENST00000269397 TRAV12-2A0A075B6T6 113 aa20.51■□□□□ 0.87
CBX4-201ENST00000269397 H3BUX3 64 aa20.51■□□□□ 0.87
CBX4-201ENST00000269397 PAPPA-AS1Q5QFB9 102 aa20.51■□□□□ 0.87
CBX4-201ENST00000269397 MT-ATP8P03928 68 aa20.5■□□□□ 0.87
CBX4-201ENST00000269397 SLC25A29Q8N8R3 303 aa20.5■□□□□ 0.87
CBX4-201ENST00000269397 SCGB1C2P0DMR2 95 aa20.5■□□□□ 0.87
CBX4-201ENST00000269397 ATP6V0E2Q8NHE4 81 aa20.5■□□□□ 0.87
CBX4-201ENST00000269397 MDFICQ9P1T7 246 aa20.5■□□□□ 0.87
CBX4-201ENST00000269397 J3QQQ9 107 aa20.49■□□□□ 0.87
CBX4-201ENST00000269397 RAX2Q96IS3 184 aa20.49■□□□□ 0.87
CBX4-201ENST00000269397 USMG5Q96IX5 58 aa20.49■□□□□ 0.87
CBX4-201ENST00000269397 DAZ1Q9NQZ3 744 aaKnown RBP20.49■□□□□ 0.87
CBX4-201ENST00000269397 ZNF876PQ49A33 203 aa20.49■□□□□ 0.87
CBX4-201ENST00000269397 TMEM141Q96I45 108 aa20.49■□□□□ 0.87
CBX4-201ENST00000269397 AMELXQ99217 191 aa20.49■□□□□ 0.87
CBX4-201ENST00000269397 CSPG4Q6UVK1 2322 aa20.48■□□□□ 0.87
CBX4-201ENST00000269397 TIMM17AQ99595 171 aa20.48■□□□□ 0.87
CBX4-201ENST00000269397 ZNF56Q15929 161 aa20.48■□□□□ 0.87
CBX4-201ENST00000269397 H7C2G1 150 aa20.47■□□□□ 0.87
CBX4-201ENST00000269397 SPINK8P0C7L1 97 aa20.47■□□□□ 0.87
CBX4-201ENST00000269397 C10orf126Q8N4M7 172 aa20.47■□□□□ 0.87
CBX4-201ENST00000269397 IGHV4-39P01824 125 aa20.46■□□□□ 0.87
CBX4-201ENST00000269397 IGHG2P01859 326 aa20.46■□□□□ 0.87
CBX4-201ENST00000269397 LGALS3P17931 250 aaKnown RBP20.46■□□□□ 0.87
CBX4-201ENST00000269397 RPL32P62910 135 aaKnown RBP20.46■□□□□ 0.87
CBX4-201ENST00000269397 SPTBN4Q9H254 2564 aa20.46■□□□□ 0.87
CBX4-201ENST00000269397 ZNF688P0C7X2 276 aa20.46■□□□□ 0.87
CBX4-201ENST00000269397 XGP55808 180 aa20.46■□□□□ 0.87
CBX4-201ENST00000269397 C19orf84I3L1E1 186 aa20.45■□□□□ 0.86
CBX4-201ENST00000269397 TMEM95Q3KNT9 176 aa20.45■□□□□ 0.86
CBX4-201ENST00000269397 TEN1Q86WV5 123 aa20.45■□□□□ 0.86
CBX4-201ENST00000269397 TRBV27A0A0K0K1C4 114 aa20.45■□□□□ 0.86
CBX4-201ENST00000269397 PRO1854Q9UHT4 67 aa20.45■□□□□ 0.86
CBX4-201ENST00000269397 TRBV7-9A0A0J9YWB2 115 aa20.44■□□□□ 0.86
CBX4-201ENST00000269397 IGHV4-61A0A0C4DH41 118 aa20.44■□□□□ 0.86
CBX4-201ENST00000269397 DCANP1Q8TF63 244 aa20.44■□□□□ 0.86
CBX4-201ENST00000269397 PPDPFLQ8WWR9 84 aa20.44■□□□□ 0.86
CBX4-201ENST00000269397 A4D1N5 150 aa20.43■□□□□ 0.86
CBX4-201ENST00000269397 LYRM7Q5U5X0 104 aa20.43■□□□□ 0.86
CBX4-201ENST00000269397 ZNF580Q9UK33 172 aa20.43■□□□□ 0.86
CBX4-201ENST00000269397 DOPEY2Q9Y3R5 2298 aa20.43■□□□□ 0.86
CBX4-201ENST00000269397 EIF4EBP3O60516 100 aaPredicted RBP20.42■□□□□ 0.86
CBX4-201ENST00000269397 Q6ZUT4 128 aa20.42■□□□□ 0.86
CBX4-201ENST00000269397 TRAV2A0A0B4J234 112 aa20.41■□□□□ 0.86
CBX4-201ENST00000269397 A8MWV9 139 aa20.41■□□□□ 0.86
CBX4-201ENST00000269397 LGALS9O00182 355 aa20.41■□□□□ 0.86
CBX4-201ENST00000269397 TCTEX1D4Q5JR98 221 aa20.41■□□□□ 0.86
CBX4-201ENST00000269397 ANKRD29Q8N6D5 301 aa20.41■□□□□ 0.86
CBX4-201ENST00000269397 CREBBPQ92793 2442 aa20.41■□□□□ 0.86
CBX4-201ENST00000269397 IGHV3-16A0A0C4DH30 117 aa20.4■□□□□ 0.86
CBX4-201ENST00000269397 M0QY20 66 aa20.4■□□□□ 0.86
CBX4-201ENST00000269397 ID1P41134 155 aa20.4■□□□□ 0.86
CBX4-201ENST00000269397 CRYBA4P53673 196 aa20.4■□□□□ 0.86
CBX4-201ENST00000269397 Q5PR19 223 aa20.4■□□□□ 0.86
CBX4-201ENST00000269397 TRPT1Q86TN4 253 aaKnown RBP20.4■□□□□ 0.86
CBX4-201ENST00000269397 Q8N1Y9 231 aa20.4■□□□□ 0.86
CBX4-201ENST00000269397 P0DMU3 169 aa20.4■□□□□ 0.86
CBX4-201ENST00000269397 FAM231AP0DMU4 169 aa20.4■□□□□ 0.86
CBX4-201ENST00000269397 FAM231CP0DMU5 169 aa20.4■□□□□ 0.86
CBX4-201ENST00000269397 TRBV20-1A0A075B6N2 111 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms