RNA–Protein interactions for RNA: ENST00000262887.9

XRCC1-201, Transcript of X-ray repair cross complementing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene XRCC1, Length 2,802 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1-201ENST00000262887 PMVKQ15126 192 aa11.33□□□□□ -0.6
XRCC1-201ENST00000262887 TRPT1Q86TN4 253 aaKnown RBP11.33□□□□□ -0.6
XRCC1-201ENST00000262887 TP53TG1Q9Y2A0 90 aa11.33□□□□□ -0.6
XRCC1-201ENST00000262887 IGHV1-69DA0A0B4J2H0 117 aa11.33□□□□□ -0.6
XRCC1-201ENST00000262887 EBI3Q14213 229 aa11.33□□□□□ -0.6
XRCC1-201ENST00000262887 TMEM170BQ5T4T1 132 aa11.33□□□□□ -0.6
XRCC1-201ENST00000262887 TMEM126AQ9H061 195 aa11.33□□□□□ -0.6
XRCC1-201ENST00000262887 LENEPQ9Y5L5 61 aa11.33□□□□□ -0.6
XRCC1-201ENST00000262887 UTP20O75691 2785 aaKnown RBP11.32□□□□□ -0.6
XRCC1-201ENST00000262887 TRAV21A0A0B4J279 112 aa11.32□□□□□ -0.6
XRCC1-201ENST00000262887 ATP6V0E1O15342 81 aa11.32□□□□□ -0.6
XRCC1-201ENST00000262887 SPXQ9BT56 116 aa11.32□□□□□ -0.6
XRCC1-201ENST00000262887 SPTAN1Q13813 2472 aaKnown RBP11.32□□□□□ -0.6
XRCC1-201ENST00000262887 VPS13CQ709C8 3753 aa11.32□□□□□ -0.6
XRCC1-201ENST00000262887 IGIPA6NJ69 53 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 GPHB5Q86YW7 130 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 DEFB104AQ8WTQ1 72 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 OOSP1A8MZH6 123 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 ZFAND2AQ8N6M9 145 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 EEF1AKMT3Q96AZ1 226 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 MDFICQ9P1T7 246 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 A4D1N5 150 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 J3QQQ9 107 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 IGHV3-33P01772 117 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 C5orf47Q569G3 176 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 IGF2-ASQ6U949 168 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 C9orf139Q6ZV77 190 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 C20orf173Q96LM9 149 aa11.31□□□□□ -0.6
XRCC1-201ENST00000262887 LGALS3P17931 250 aaKnown RBP11.3□□□□□ -0.6
XRCC1-201ENST00000262887 Q8N1Y9 231 aa11.3□□□□□ -0.6
XRCC1-201ENST00000262887 OR10J6PQ8NGY7 276 aa11.3□□□□□ -0.6
XRCC1-201ENST00000262887 LINC01560Q8TB33 94 aa11.3□□□□□ -0.6
XRCC1-201ENST00000262887 NTN5Q8WTR8 489 aaPredicted RBP11.3□□□□□ -0.6
XRCC1-201ENST00000262887 NRGNQ92686 78 aa11.3□□□□□ -0.6
XRCC1-201ENST00000262887 AMELXQ99217 191 aa11.3□□□□□ -0.6
XRCC1-201ENST00000262887 CSMD2Q7Z408 3487 aa11.3□□□□□ -0.6
XRCC1-201ENST00000262887 TMEM141Q96I45 108 aa11.3□□□□□ -0.6
XRCC1-201ENST00000262887 LINC00477Q96M19 166 aa11.3□□□□□ -0.6
XRCC1-201ENST00000262887 CSDC2Q9Y534 153 aaKnown RBP11.3□□□□□ -0.6
XRCC1-201ENST00000262887 G3V318 75 aa11.29□□□□□ -0.6
XRCC1-201ENST00000262887 H7C2G1 150 aa11.29□□□□□ -0.6
XRCC1-201ENST00000262887 MINOS1Q5TGZ0 78 aa11.29□□□□□ -0.6
XRCC1-201ENST00000262887 TMEM263Q8WUH6 116 aaKnown RBP11.29□□□□□ -0.6
XRCC1-201ENST00000262887 MINOS1-NBL1R4GNA1 71 aa11.29□□□□□ -0.6
XRCC1-201ENST00000262887 P0DMU3 169 aa11.29□□□□□ -0.6
XRCC1-201ENST00000262887 FAM231AP0DMU4 169 aa11.29□□□□□ -0.6
XRCC1-201ENST00000262887 FAM231CP0DMU5 169 aa11.29□□□□□ -0.6
XRCC1-201ENST00000262887 RPL39P62891 51 aaKnown RBP11.29□□□□□ -0.6
XRCC1-201ENST00000262887 ZNRF2Q8NHG8 242 aa11.29□□□□□ -0.6
XRCC1-201ENST00000262887 U3KQE9 123 aa11.29□□□□□ -0.6
XRCC1-201ENST00000262887 EIF4EBP3O60516 100 aaPredicted RBP11.28□□□□□ -0.6
XRCC1-201ENST00000262887 ITLN2Q8WWU7 325 aaPredicted RBP11.28□□□□□ -0.6
XRCC1-201ENST00000262887 TRBV7-1A0A0A6YYK4 115 aa11.28□□□□□ -0.6
XRCC1-201ENST00000262887 GNRH2O43555 120 aa11.28□□□□□ -0.6
XRCC1-201ENST00000262887 MED14OSP0DP75 135 aa11.28□□□□□ -0.6
XRCC1-201ENST00000262887 FOXC1Q12948 553 aa11.28□□□□□ -0.6
XRCC1-201ENST00000262887 ATXN8Q156A1 80 aa11.28□□□□□ -0.6
XRCC1-201ENST00000262887 CRYBG3Q68DQ2 2970 aa11.28□□□□□ -0.6
XRCC1-201ENST00000262887 TIMM17AQ99595 171 aa11.27□□□□□ -0.6
XRCC1-201ENST00000262887 A0A0B4J2C4 111 aa11.27□□□□□ -0.61
XRCC1-201ENST00000262887 RNASE4P34096 147 aaKnown RBP11.27□□□□□ -0.61
XRCC1-201ENST00000262887 DEFB1P60022 68 aa11.27□□□□□ -0.61
XRCC1-201ENST00000262887 TRAV8-4A0A0B4J246 113 aa11.27□□□□□ -0.61
XRCC1-201ENST00000262887 RNASE3P12724 160 aaKnown RBP11.27□□□□□ -0.61
XRCC1-201ENST00000262887 ZNF876PQ49A33 203 aa11.27□□□□□ -0.61
XRCC1-201ENST00000262887 LINC01620Q4KN68 170 aa11.27□□□□□ -0.61
XRCC1-201ENST00000262887 POM121L12Q8N7R1 296 aa11.27□□□□□ -0.61
XRCC1-201ENST00000262887 C15orf53Q8NAA6 179 aa11.27□□□□□ -0.61
XRCC1-201ENST00000262887 Q1RN00 199 aa11.26□□□□□ -0.61
XRCC1-201ENST00000262887 KLK9Q2XQG4 91 aa11.26□□□□□ -0.61
XRCC1-201ENST00000262887 ODF3Q96PU9 254 aa11.26□□□□□ -0.61
XRCC1-201ENST00000262887 KLK9Q9UKQ9 250 aa11.26□□□□□ -0.61
XRCC1-201ENST00000262887 TRAV2A0A0B4J234 112 aa11.26□□□□□ -0.61
XRCC1-201ENST00000262887 C3orf56Q8N813 242 aa11.26□□□□□ -0.61
XRCC1-201ENST00000262887 IGHV4OR15-8A0A075B7B6 117 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 A0A087WW49 117 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 TEX49A0A1B0GTD5 131 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 OVOL1O14753 267 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 POLR2KP53803 58 aaKnown RBP11.25□□□□□ -0.61
XRCC1-201ENST00000262887 MUSTN1Q8IVN3 82 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 LINC01587Q99440 93 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 VCYO14598 125 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 IGHV4-39P01824 125 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 ELANEP08246 267 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 RPL13AP40429 203 aaKnown RBP11.25□□□□□ -0.61
XRCC1-201ENST00000262887 Q8NA96 180 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 ACACBO00763 2458 aa11.25□□□□□ -0.61
XRCC1-201ENST00000262887 CFAP46Q8IYW2 2715 aa11.24□□□□□ -0.61
XRCC1-201ENST00000262887 DNAJC30Q96LL9 226 aa11.24□□□□□ -0.61
XRCC1-201ENST00000262887 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.24□□□□□ -0.61
XRCC1-201ENST00000262887 LEPROTO15243 131 aa11.24□□□□□ -0.61
XRCC1-201ENST00000262887 LINC00315P59091 139 aa11.24□□□□□ -0.61
XRCC1-201ENST00000262887 LINC01600Q96MT4 127 aa11.24□□□□□ -0.61
XRCC1-201ENST00000262887 KIF25-AS1Q9Y6Z4 181 aa11.24□□□□□ -0.61
XRCC1-201ENST00000262887 TRBV10-2A0A0K0K1G8 114 aa11.23□□□□□ -0.61
XRCC1-201ENST00000262887 SUMO4Q6EEV6 95 aa11.23□□□□□ -0.61
XRCC1-201ENST00000262887 CENPEQ02224 2701 aa11.23□□□□□ -0.61
XRCC1-201ENST00000262887 SDHAF1A6NFY7 115 aa11.22□□□□□ -0.61
XRCC1-201ENST00000262887 F5H697 171 aa11.22□□□□□ -0.61
XRCC1-201ENST00000262887 F6UB75 175 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms