RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 IGKV3-20P01619 116 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 BLCAPP62952 87 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 OR10J6PQ8NGY7 276 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 PIFOQ8TCI5 191 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 PRO0461Q9UI25 63 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 U3KQE9 123 aa7.59□□□□□ -1.19
LIG3-201ENST00000262327 USP9XQ93008 2570 aaPredicted RBP7.59□□□□□ -1.2
LIG3-201ENST00000262327 F8VRH5 84 aa7.58□□□□□ -1.2
LIG3-201ENST00000262327 C2orf66Q6UXQ4 117 aa7.58□□□□□ -1.2
LIG3-201ENST00000262327 BEX4Q9NWD9 120 aaPredicted RBP7.58□□□□□ -1.2
LIG3-201ENST00000262327 ZANQ9Y493 2812 aa7.58□□□□□ -1.2
LIG3-201ENST00000262327 A0A087WWL8 130 aa7.58□□□□□ -1.2
LIG3-201ENST00000262327 H7C1H1 209 aa7.58□□□□□ -1.2
LIG3-201ENST00000262327 IGHV4-38-2P0DP08 117 aa7.58□□□□□ -1.2
LIG3-201ENST00000262327 ZFAND6Q6FIF0 208 aa7.58□□□□□ -1.2
LIG3-201ENST00000262327 PPDPFQ9H3Y8 114 aa7.58□□□□□ -1.2
LIG3-201ENST00000262327 VPREB3Q9UKI3 123 aa7.58□□□□□ -1.2
LIG3-201ENST00000262327 DUSP14O95147 198 aaKnown RBP7.58□□□□□ -1.2
LIG3-201ENST00000262327 ASIPP42127 132 aa7.58□□□□□ -1.2
LIG3-201ENST00000262327 FLNCQ14315 2725 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 GAGE12JA6NER3 117 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 GAGE7O76087 117 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 GAGE12FP0CL80 117 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 GAGE12GP0CL81 117 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 GAGE12IP0CL82 117 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 SLC25A16P16260 332 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 GAGE4Q13068 117 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 C9orf139Q6ZV77 190 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 LRRC75A-AS1Q8N1F1 130 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 BAALCQ8WXS3 180 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 PLEKHB2Q96CS7 222 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 SPXQ9BT56 116 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 MOB4Q9Y3A3 225 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 TRAV21A0A0B4J279 112 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 TEX29Q8N6K0 151 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 PRADC1Q9BSG0 188 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 DPH3P1Q9H4G8 78 aa7.57□□□□□ -1.2
LIG3-201ENST00000262327 PLNP26678 52 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 RPL39P62891 51 aaKnown RBP7.56□□□□□ -1.2
LIG3-201ENST00000262327 SCGB1D4Q6XE38 83 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 NFE4Q86UQ8 179 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 FAM208BQ5VWN6 2430 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 TRBV20-1A0A075B6N2 111 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 MYMXA0A1B0GTQ4 84 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 RNF223E7ERA6 249 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 F5H697 171 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 H3BUX3 64 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 RNASE3P12724 160 aaKnown RBP7.56□□□□□ -1.2
LIG3-201ENST00000262327 HLA-DRB4P13762 266 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 FAM74A4Q5TZK3 123 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 NEXN-AS1Q8NBZ9 246 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 RHPN1-AS1Q9BWJ2 59 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 HLA-DRB4X5D2U9 266 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 MYO18BQ8IUG5 2567 aa7.56□□□□□ -1.2
LIG3-201ENST00000262327 IGHV4-4A0A075B6R2 117 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 IGHV4-61A0A0C4DH41 118 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 ZNF815PA8K554 130 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 LGALS1P09382 135 aaKnown RBP7.55□□□□□ -1.2
LIG3-201ENST00000262327 NRGNQ92686 78 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 TOMM6Q96B49 74 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 MRPL53Q96EL3 112 aaKnown RBP7.55□□□□□ -1.2
LIG3-201ENST00000262327 TRBV7-3A0A075B6L6 115 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 IGHV4-30-2A0A087WSY4 118 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 TGFAP01135 160 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 ORMDL2Q53FV1 153 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 LINC00477Q96M19 166 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 NOTCH3Q9UM47 2321 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 TRAV12-3A0A0B4J271 114 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 KIR2DL4Q99706 377 aa7.55□□□□□ -1.2
LIG3-201ENST00000262327 TRAV12-2A0A075B6T6 113 aa7.54□□□□□ -1.2
LIG3-201ENST00000262327 SOCS3O14543 225 aa7.54□□□□□ -1.2
LIG3-201ENST00000262327 SRSF9Q13242 221 aaKnown RBP eCLIP7.54□□□□□ -1.2
LIG3-201ENST00000262327 DEFB113Q30KQ7 82 aa7.54□□□□□ -1.2
LIG3-201ENST00000262327 C10orf99Q6UWK7 81 aa7.54□□□□□ -1.2
LIG3-201ENST00000262327 IGHV1-69DA0A0B4J2H0 117 aa7.54□□□□□ -1.2
LIG3-201ENST00000262327 IGHV1-69P01742 117 aa7.54□□□□□ -1.2
LIG3-201ENST00000262327 KRTAP10-9P60411 292 aa7.54□□□□□ -1.2
LIG3-201ENST00000262327 TP53TG1Q9Y2A0 90 aa7.54□□□□□ -1.2
LIG3-201ENST00000262327 FAM223BA6NKX1 122 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 FAM223AQ8IWN6 122 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 OPRPNQ99935 248 aaPredicted RBP7.53□□□□□ -1.2
LIG3-201ENST00000262327 ZNF256Q9Y2P7 627 aaPredicted RBP7.53□□□□□ -1.2
LIG3-201ENST00000262327 LOC107984156A0A0G2JMH3 177 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 LINC01549A6NIU2 74 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 C11orf86A6NJI1 115 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 OVOL1O14753 267 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 CD7P09564 240 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 RRN3P1Q2M238 152 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 ARL17AQ8IVW1 177 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 NDUFA4O00483 81 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 TSHBP01222 138 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 CRYGDP07320 174 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 SMCPP49901 116 aaPredicted RBP7.53□□□□□ -1.2
LIG3-201ENST00000262327 C19orf54Q5BKX5 351 aa7.53□□□□□ -1.2
LIG3-201ENST00000262327 MORN3Q6PF18 240 aaPredicted RBP7.53□□□□□ -1.2
LIG3-201ENST00000262327 IGHV3-64A0A075B6Q5 118 aa7.52□□□□□ -1.21
LIG3-201ENST00000262327 TRAV12-1A0A0B4J245 112 aa7.52□□□□□ -1.21
LIG3-201ENST00000262327 HOXA3O43365 443 aaPredicted RBP7.52□□□□□ -1.21
LIG3-201ENST00000262327 ZNF688P0C7X2 276 aa7.52□□□□□ -1.21
LIG3-201ENST00000262327 NDUFV3P56181 108 aaKnown RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms