RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 SPANXB1Q9NS25 103 aaPredicted RBP12.84□□□□□ -0.35
FOXA1-201ENST00000250448 WFDC2Q14508 124 aa12.84□□□□□ -0.35
FOXA1-201ENST00000250448 LCNL1Q6ZST4 164 aa12.84□□□□□ -0.35
FOXA1-201ENST00000250448 U3KQE9 123 aa12.84□□□□□ -0.35
FOXA1-201ENST00000250448 TRAV41A0A0B4J266 112 aa12.83□□□□□ -0.35
FOXA1-201ENST00000250448 CUBNO60494 3623 aa12.83□□□□□ -0.36
FOXA1-201ENST00000250448 OR11H12B2RN74 326 aa12.83□□□□□ -0.36
FOXA1-201ENST00000250448 LINC01619G3V211 115 aa12.83□□□□□ -0.36
FOXA1-201ENST00000250448 ORMDL2Q53FV1 153 aa12.83□□□□□ -0.36
FOXA1-201ENST00000250448 OR11H1Q8NG94 326 aa12.83□□□□□ -0.36
FOXA1-201ENST00000250448 OR11H2Q8NH07 326 aa12.83□□□□□ -0.36
FOXA1-201ENST00000250448 TRBV7-1A0A0A6YYK4 115 aa12.83□□□□□ -0.36
FOXA1-201ENST00000250448 FSHBP01225 129 aa12.83□□□□□ -0.36
FOXA1-201ENST00000250448 RPL32P62910 135 aaKnown RBP12.83□□□□□ -0.36
FOXA1-201ENST00000250448 C16orf92Q96LL3 132 aa12.83□□□□□ -0.36
FOXA1-201ENST00000250448 RRN3P1Q2M238 152 aa12.82□□□□□ -0.36
FOXA1-201ENST00000250448 SCGB3A1Q96QR1 104 aa12.82□□□□□ -0.36
FOXA1-201ENST00000250448 KLK15Q9H2R5 256 aa12.82□□□□□ -0.36
FOXA1-201ENST00000250448 MYMXA0A1B0GTQ4 84 aa12.82□□□□□ -0.36
FOXA1-201ENST00000250448 TOMM6Q96B49 74 aa12.82□□□□□ -0.36
FOXA1-201ENST00000250448 H3BMG7 143 aa12.81□□□□□ -0.36
FOXA1-201ENST00000250448 SUMO2P61956 95 aaKnown RBP12.81□□□□□ -0.36
FOXA1-201ENST00000250448 C9orf139Q6ZV77 190 aa12.81□□□□□ -0.36
FOXA1-201ENST00000250448 A0A1B0GWB2 263 aa12.8□□□□□ -0.36
FOXA1-201ENST00000250448 HOXA3O43365 443 aaPredicted RBP12.8□□□□□ -0.36
FOXA1-201ENST00000250448 NEXN-AS1Q8NBZ9 246 aa12.8□□□□□ -0.36
FOXA1-201ENST00000250448 RASL10AQ92737 203 aa12.8□□□□□ -0.36
FOXA1-201ENST00000250448 C20orf173Q96LM9 149 aa12.8□□□□□ -0.36
FOXA1-201ENST00000250448 LENEPQ9Y5L5 61 aa12.8□□□□□ -0.36
FOXA1-201ENST00000250448 TSSC4Q9Y5U2 329 aaPredicted RBP12.8□□□□□ -0.36
FOXA1-201ENST00000250448 M0R381 172 aa12.8□□□□□ -0.36
FOXA1-201ENST00000250448 IGF1P05019 195 aa12.8□□□□□ -0.36
FOXA1-201ENST00000250448 J3QR89 54 aa12.79□□□□□ -0.36
FOXA1-201ENST00000250448 AMTNQ6UX39 209 aa12.79□□□□□ -0.36
FOXA1-201ENST00000250448 C20orf78Q9BR46 151 aa12.79□□□□□ -0.36
FOXA1-201ENST00000250448 IGHG2P01859 326 aa12.79□□□□□ -0.36
FOXA1-201ENST00000250448 ATP5G2Q06055 141 aa12.79□□□□□ -0.36
FOXA1-201ENST00000250448 TCTEX1D4Q5JR98 221 aa12.79□□□□□ -0.36
FOXA1-201ENST00000250448 GLMPQ8WWB7 406 aa12.79□□□□□ -0.36
FOXA1-201ENST00000250448 VCX2Q9H322 139 aa12.79□□□□□ -0.36
FOXA1-201ENST00000250448 C10orf99Q6UWK7 81 aa12.79□□□□□ -0.36
FOXA1-201ENST00000250448 RPL39LQ96EH5 51 aaKnown RBP12.79□□□□□ -0.36
FOXA1-201ENST00000250448 DPH3P1Q9H4G8 78 aa12.79□□□□□ -0.36
FOXA1-201ENST00000250448 SETD2Q9BYW2 2564 aaPredicted RBP12.78□□□□□ -0.36
FOXA1-201ENST00000250448 FLNBO75369 2602 aaKnown RBP12.78□□□□□ -0.36
FOXA1-201ENST00000250448 OTOGQ6ZRI0 2925 aa12.78□□□□□ -0.36
FOXA1-201ENST00000250448 SPRY2O43597 315 aa12.78□□□□□ -0.36
FOXA1-201ENST00000250448 CD300EQ496F6 205 aaPredicted RBP12.78□□□□□ -0.36
FOXA1-201ENST00000250448 C19orf54Q5BKX5 351 aa12.78□□□□□ -0.36
FOXA1-201ENST00000250448 SH2D6Q7Z4S9 175 aa12.78□□□□□ -0.36
FOXA1-201ENST00000250448 LGALS1P09382 135 aaKnown RBP12.78□□□□□ -0.36
FOXA1-201ENST00000250448 ETDBQ3ZM63 59 aa12.78□□□□□ -0.36
FOXA1-201ENST00000250448 GAGE13Q4V321 117 aa12.78□□□□□ -0.36
FOXA1-201ENST00000250448 ZFAND2AQ8N6M9 145 aa12.78□□□□□ -0.36
FOXA1-201ENST00000250448 GAGE12HA6NDE8 117 aa12.77□□□□□ -0.36
FOXA1-201ENST00000250448 IGHV3-11P01762 117 aa12.77□□□□□ -0.36
FOXA1-201ENST00000250448 BAALCQ8WXS3 180 aa12.77□□□□□ -0.36
FOXA1-201ENST00000250448 PRO0461Q9UI25 63 aa12.77□□□□□ -0.36
FOXA1-201ENST00000250448 CYSLTR1Q9Y271 337 aa12.77□□□□□ -0.36
FOXA1-201ENST00000250448 TRAV21A0A0B4J279 112 aa12.77□□□□□ -0.37
FOXA1-201ENST00000250448 S100A4P26447 101 aaKnown RBP12.77□□□□□ -0.37
FOXA1-201ENST00000250448 C2orf66Q6UXQ4 117 aa12.77□□□□□ -0.37
FOXA1-201ENST00000250448 Q6YL49 198 aa12.77□□□□□ -0.37
FOXA1-201ENST00000250448 C14orf178Q8N769 122 aaPredicted RBP12.77□□□□□ -0.37
FOXA1-201ENST00000250448 LINC00477Q96M19 166 aa12.77□□□□□ -0.37
FOXA1-201ENST00000250448 ASIPP42127 132 aa12.76□□□□□ -0.37
FOXA1-201ENST00000250448 MTURNQ8N3F0 131 aa12.76□□□□□ -0.37
FOXA1-201ENST00000250448 MGPP08493 103 aa12.76□□□□□ -0.37
FOXA1-201ENST00000250448 KRTAP1-1Q07627 177 aa12.76□□□□□ -0.37
FOXA1-201ENST00000250448 SPAG8Q99932 426 aaPredicted RBP12.76□□□□□ -0.37
FOXA1-201ENST00000250448 SMR3AQ99954 134 aa12.76□□□□□ -0.37
FOXA1-201ENST00000250448 PRADC1Q9BSG0 188 aa12.76□□□□□ -0.37
FOXA1-201ENST00000250448 TRBV12-3P01733 135 aa12.75□□□□□ -0.37
FOXA1-201ENST00000250448 MORN3Q6PF18 240 aaPredicted RBP12.75□□□□□ -0.37
FOXA1-201ENST00000250448 VPREB3Q9UKI3 123 aa12.75□□□□□ -0.37
FOXA1-201ENST00000250448 PHLDA3Q9Y5J5 127 aa12.75□□□□□ -0.37
FOXA1-201ENST00000250448 OR10J6PQ8NGY7 276 aa12.75□□□□□ -0.37
FOXA1-201ENST00000250448 GPHB5Q86YW7 130 aa12.75□□□□□ -0.37
FOXA1-201ENST00000250448 SPATA25Q9BR10 227 aa12.75□□□□□ -0.37
FOXA1-201ENST00000250448 PRSS29PA6NIE9 313 aa12.74□□□□□ -0.37
FOXA1-201ENST00000250448 B5MCH6 92 aa12.74□□□□□ -0.37
FOXA1-201ENST00000250448 OVOL1O14753 267 aa12.74□□□□□ -0.37
FOXA1-201ENST00000250448 ANXA2RQ3ZCQ2 193 aa12.74□□□□□ -0.37
FOXA1-201ENST00000250448 RNF183Q96D59 192 aa12.74□□□□□ -0.37
FOXA1-201ENST00000250448 FAM223BA6NKX1 122 aa12.74□□□□□ -0.37
FOXA1-201ENST00000250448 FAM223AQ8IWN6 122 aa12.74□□□□□ -0.37
FOXA1-201ENST00000250448 ZNF815PA8K554 130 aa12.73□□□□□ -0.37
FOXA1-201ENST00000250448 MED14OSP0DP75 135 aa12.73□□□□□ -0.37
FOXA1-201ENST00000250448 CRIP2P52943 208 aaPredicted RBP12.73□□□□□ -0.37
FOXA1-201ENST00000250448 ANK3Q12955 4377 aaKnown RBP12.73□□□□□ -0.37
FOXA1-201ENST00000250448 DEFB1P60022 68 aa12.73□□□□□ -0.37
FOXA1-201ENST00000250448 SOCS3O14543 225 aa12.72□□□□□ -0.37
FOXA1-201ENST00000250448 UNQ9165/PRO28630Q6UXU0 137 aa12.72□□□□□ -0.37
FOXA1-201ENST00000250448 PLEKHB2Q96CS7 222 aa12.71□□□□□ -0.37
FOXA1-201ENST00000250448 SCGB1D4Q6XE38 83 aa12.71□□□□□ -0.37
FOXA1-201ENST00000250448 MRPL16Q9NX20 251 aaKnown RBP12.71□□□□□ -0.37
FOXA1-201ENST00000250448 PPP1R17O96001 155 aa12.71□□□□□ -0.38
FOXA1-201ENST00000250448 RNASE4P34096 147 aaKnown RBP12.71□□□□□ -0.38
FOXA1-201ENST00000250448 HIST2H2BDQ6DRA6 164 aa12.7□□□□□ -0.38
FOXA1-201ENST00000250448 INSL3P51460 131 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms