RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TRAV12-3A0A0B4J271 114 aa12.28□□□□□ -0.44
HOXD3-201ENST00000249440 PRSS29PA6NIE9 313 aa12.28□□□□□ -0.44
HOXD3-201ENST00000249440 CYSLTR1Q9Y271 337 aa12.28□□□□□ -0.44
HOXD3-201ENST00000249440 TMEM89A2RUT3 159 aa12.27□□□□□ -0.44
HOXD3-201ENST00000249440 LINC01619G3V211 115 aa12.27□□□□□ -0.44
HOXD3-201ENST00000249440 IGHV4-59P01825 116 aa12.27□□□□□ -0.44
HOXD3-201ENST00000249440 WFDC12Q8WWY7 111 aa12.27□□□□□ -0.44
HOXD3-201ENST00000249440 ODF3Q96PU9 254 aa12.27□□□□□ -0.44
HOXD3-201ENST00000249440 SNRPD3P62318 126 aaKnown RBP12.27□□□□□ -0.45
HOXD3-201ENST00000249440 DEFB112Q30KQ8 113 aa12.27□□□□□ -0.45
HOXD3-201ENST00000249440 E9PLD3 99 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 SUMO4Q6EEV6 95 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 ZANQ9Y493 2812 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 F5H697 171 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 VCYO14598 125 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 ZNF688P0C7X2 276 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 POLR2KP53803 58 aaKnown RBP12.26□□□□□ -0.45
HOXD3-201ENST00000249440 KRTAP10-9P60411 292 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 NEGR1Q7Z3B1 354 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 KIR2DL4Q99706 377 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 JPT2Q9H910 190 aa12.26□□□□□ -0.45
HOXD3-201ENST00000249440 ANKRD17O75179 2603 aaKnown RBP12.25□□□□□ -0.45
HOXD3-201ENST00000249440 SAP30O75446 220 aa12.25□□□□□ -0.45
HOXD3-201ENST00000249440 LINC01356Q8N9X3 169 aa12.25□□□□□ -0.45
HOXD3-201ENST00000249440 A0A087WWL8 130 aa12.25□□□□□ -0.45
HOXD3-201ENST00000249440 DUSP14O95147 198 aaKnown RBP12.25□□□□□ -0.45
HOXD3-201ENST00000249440 C12orf74Q32Q52 190 aa12.25□□□□□ -0.45
HOXD3-201ENST00000249440 ZFP2Q6ZN57 461 aa12.25□□□□□ -0.45
HOXD3-201ENST00000249440 TRBV7-3A0A075B6L6 115 aa12.24□□□□□ -0.45
HOXD3-201ENST00000249440 A0A0J9YX75 114 aa12.24□□□□□ -0.45
HOXD3-201ENST00000249440 C10orf99Q6UWK7 81 aa12.24□□□□□ -0.45
HOXD3-201ENST00000249440 TP53TG1Q9Y2A0 90 aa12.24□□□□□ -0.45
HOXD3-201ENST00000249440 IGLL5B9A064 214 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 J3QKU1 62 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 PAPPA-AS1Q5QFB9 102 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 PRADC1Q9BSG0 188 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 SCGB2A2Q13296 93 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 SYT8Q8NBV8 401 aa12.23□□□□□ -0.45
HOXD3-201ENST00000249440 IGHV3-16A0A0C4DH30 117 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 IGIPA6NJ69 53 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 K7EQG2 157 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 LGALS9O00182 355 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 CRYGDP07320 174 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 C9orf85Q96MD7 179 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 SDHAF1A6NFY7 115 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 G3V4G9 280 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 J3QLI3 93 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 IGKV3-20P01619 116 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 LGALS1P09382 135 aaKnown RBP12.22□□□□□ -0.45
HOXD3-201ENST00000249440 TMEM141Q96I45 108 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 ZNF479Q96JC4 524 aa12.22□□□□□ -0.45
HOXD3-201ENST00000249440 TRAV12-2A0A075B6T6 113 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 TRBV6-5A0A0K0K1A5 114 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 TRBV27A0A0K0K1C4 114 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 TSHBP01222 138 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 PMVKQ15126 192 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 FAM74A4Q5TZK3 123 aa12.21□□□□□ -0.45
HOXD3-201ENST00000249440 ZNF815PA8K554 130 aa12.21□□□□□ -0.46
HOXD3-201ENST00000249440 FOXI2Q6ZQN5 318 aa12.21□□□□□ -0.46
HOXD3-201ENST00000249440 TIMM17AQ99595 171 aa12.21□□□□□ -0.46
HOXD3-201ENST00000249440 AKAP9Q99996 3911 aa12.21□□□□□ -0.46
HOXD3-201ENST00000249440 Q8N1Y9 231 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 MDFICQ9P1T7 246 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 A0A1B0GWB2 263 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 TGFAP01135 160 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 RIPPLY3P57055 190 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 SYNJ2BPP57105 145 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 HERVK_113P61574 105 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 SCGB1D4Q6XE38 83 aa12.2□□□□□ -0.46
HOXD3-201ENST00000249440 UNC79Q9P2D8 2635 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 IGLV4-69A0A075B6H9 119 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 IGHV1OR15-1A0A075B7D0 117 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 RPL39P62891 51 aaKnown RBP12.19□□□□□ -0.46
HOXD3-201ENST00000249440 PDZD2O15018 2839 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 C11orf86A6NJI1 115 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 ELANEP08246 267 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 COX6B1P14854 86 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 ZNF56Q15929 161 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 SPINK13Q1W4C9 94 aa12.19□□□□□ -0.46
HOXD3-201ENST00000249440 CD300EQ496F6 205 aaPredicted RBP12.19□□□□□ -0.46
HOXD3-201ENST00000249440 DEFB104AQ8WTQ1 72 aa12.18□□□□□ -0.46
HOXD3-201ENST00000249440 VPREB3Q9UKI3 123 aa12.18□□□□□ -0.46
HOXD3-201ENST00000249440 NAV2Q8IVL1 2488 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 A0A096LNT2 108 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 TMEM238LA0A1B0GVL6 79 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 A6NJY4 79 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 M0QY20 66 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 HOXA3O43365 443 aaPredicted RBP12.17□□□□□ -0.46
HOXD3-201ENST00000249440 RRN3P1Q2M238 152 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 UBE2E2Q96LR5 201 aa12.17□□□□□ -0.46
HOXD3-201ENST00000249440 ZNF256Q9Y2P7 627 aaPredicted RBP12.17□□□□□ -0.46
HOXD3-201ENST00000249440 F8W1H4 67 aa12.16□□□□□ -0.46
HOXD3-201ENST00000249440 TRPT1Q86TN4 253 aaKnown RBP12.16□□□□□ -0.46
HOXD3-201ENST00000249440 SORL1Q92673 2214 aa12.16□□□□□ -0.46
HOXD3-201ENST00000249440 HOXD3P31249 432 aaPredicted RBP12.16□□□□□ -0.46
HOXD3-201ENST00000249440 EMP1P54849 157 aa12.16□□□□□ -0.46
HOXD3-201ENST00000249440 SRSF9Q13242 221 aaKnown RBP eCLIP12.16□□□□□ -0.46
HOXD3-201ENST00000249440 COTL1Q14019 142 aa12.16□□□□□ -0.46
HOXD3-201ENST00000249440 CCDC168Q8NDH2 2452 aa12.16□□□□□ -0.46
HOXD3-201ENST00000249440 RPL24P83731 157 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms