RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 TMEM189A5PLL7 270 aa9.5□□□□□ -0.89
HIF3A-201ENST00000244302 FABP5P3A8MUU1 101 aa9.5□□□□□ -0.89
HIF3A-201ENST00000244302 COX8AP10176 69 aa9.5□□□□□ -0.89
HIF3A-201ENST00000244302 HLA-DRB4P13762 266 aa9.5□□□□□ -0.89
HIF3A-201ENST00000244302 HLA-DRB4X5D2U9 266 aa9.5□□□□□ -0.89
HIF3A-201ENST00000244302 OR11H12B2RN74 326 aa9.49□□□□□ -0.89
HIF3A-201ENST00000244302 GNRH2O43555 120 aa9.49□□□□□ -0.89
HIF3A-201ENST00000244302 NUDT3O95989 172 aa9.49□□□□□ -0.89
HIF3A-201ENST00000244302 SAMD13Q5VXD3 122 aa9.49□□□□□ -0.89
HIF3A-201ENST00000244302 KLLNB2CW77 178 aa9.49□□□□□ -0.89
HIF3A-201ENST00000244302 FAM104BQ5XKR9 115 aa9.49□□□□□ -0.89
HIF3A-201ENST00000244302 SHISA2Q6UWI4 295 aa9.49□□□□□ -0.89
HIF3A-201ENST00000244302 LYZL1Q6UWQ5 148 aa9.49□□□□□ -0.89
HIF3A-201ENST00000244302 ORMDL3Q8N138 153 aa9.49□□□□□ -0.89
HIF3A-201ENST00000244302 TAX1BP3O14907 124 aa9.48□□□□□ -0.89
HIF3A-201ENST00000244302 RPL35AP18077 110 aaKnown RBP9.48□□□□□ -0.89
HIF3A-201ENST00000244302 LGALS9BQ3B8N2 356 aa9.48□□□□□ -0.89
HIF3A-201ENST00000244302 LGALS9CQ6DKI2 356 aa9.48□□□□□ -0.89
HIF3A-201ENST00000244302 OR4C5Q8NGB2 326 aa9.48□□□□□ -0.89
HIF3A-201ENST00000244302 VAMP3Q15836 100 aa9.47□□□□□ -0.89
HIF3A-201ENST00000244302 ANXA2RQ3ZCQ2 193 aa9.47□□□□□ -0.89
HIF3A-201ENST00000244302 C9orf66Q5T8R8 295 aa9.47□□□□□ -0.89
HIF3A-201ENST00000244302 HTN1P15515 57 aa9.47□□□□□ -0.89
HIF3A-201ENST00000244302 CDKN1BP46527 198 aa9.47□□□□□ -0.89
HIF3A-201ENST00000244302 SEC11AP67812 179 aa9.47□□□□□ -0.89
HIF3A-201ENST00000244302 PRELID3AQ96N28 172 aa9.47□□□□□ -0.89
HIF3A-201ENST00000244302 XCL2Q9UBD3 114 aa9.47□□□□□ -0.89
HIF3A-201ENST00000244302 TIMM8BQ9Y5J9 83 aaPredicted RBP9.47□□□□□ -0.89
HIF3A-201ENST00000244302 D6R8Y8 96 aa9.46□□□□□ -0.89
HIF3A-201ENST00000244302 MSRB1Q9NZV6 116 aa9.46□□□□□ -0.89
HIF3A-201ENST00000244302 LENEPQ9Y5L5 61 aa9.46□□□□□ -0.89
HIF3A-201ENST00000244302 DUSP14O95147 198 aaKnown RBP9.46□□□□□ -0.9
HIF3A-201ENST00000244302 GIG44P09565 113 aaPredicted RBP9.46□□□□□ -0.9
HIF3A-201ENST00000244302 KRTAP10-11P60412 298 aa9.46□□□□□ -0.9
HIF3A-201ENST00000244302 H0Y8G0 127 aa9.45□□□□□ -0.9
HIF3A-201ENST00000244302 HBDP02042 147 aa9.45□□□□□ -0.9
HIF3A-201ENST00000244302 IFI27P40305 119 aaPredicted RBP9.45□□□□□ -0.9
HIF3A-201ENST00000244302 LINC01559Q495D7 138 aa9.45□□□□□ -0.9
HIF3A-201ENST00000244302 Q6ZVH6 145 aa9.45□□□□□ -0.9
HIF3A-201ENST00000244302 TRPT1Q86TN4 253 aaKnown RBP9.45□□□□□ -0.9
HIF3A-201ENST00000244302 STHQ8IWL8 128 aa9.45□□□□□ -0.9
HIF3A-201ENST00000244302 A0A096LNJ9 63 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 TRAV21A0A0B4J279 112 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 C7orf71A4D174 169 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 A8MTW9 85 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 C2orf91Q6ZV80 131 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 Q8N1Y9 231 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 FER1L6-AS1Q8NA97 138 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 G3V4G9 280 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 PPBPP02775 128 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 IGLC6P0CF74 106 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 MRPL51Q4U2R6 128 aaKnown RBP9.44□□□□□ -0.9
HIF3A-201ENST00000244302 OR2K2Q8NGT1 345 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 CNFNQ9BYD5 112 aa9.44□□□□□ -0.9
HIF3A-201ENST00000244302 SIVA1O15304 175 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 INSL3P51460 131 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 RBX1P62877 108 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 AMN1Q8IY45 258 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 MDFICQ9P1T7 246 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 MUC4Q99102 2169 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 IGHV3OR16-12A0A075B7B8 117 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 H3BVH4 76 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 NCR2O95944 276 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 LEPP41159 167 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 RNASE8Q8TDE3 154 aaKnown RBP9.43□□□□□ -0.9
HIF3A-201ENST00000244302 TP73-AS1Q9UF72 201 aa9.43□□□□□ -0.9
HIF3A-201ENST00000244302 LINC01546A6NGU7 62 aa9.42□□□□□ -0.9
HIF3A-201ENST00000244302 FGF6P10767 208 aa9.42□□□□□ -0.9
HIF3A-201ENST00000244302 CKS2P33552 79 aa9.42□□□□□ -0.9
HIF3A-201ENST00000244302 TWIST1Q15672 202 aa9.42□□□□□ -0.9
HIF3A-201ENST00000244302 TMEM97Q5BJF2 176 aa9.42□□□□□ -0.9
HIF3A-201ENST00000244302 ODF3Q96PU9 254 aa9.42□□□□□ -0.9
HIF3A-201ENST00000244302 MCRIP2Q9BUT9 160 aaKnown RBP9.42□□□□□ -0.9
HIF3A-201ENST00000244302 TRBV7-9A0A0J9YWB2 115 aa9.41□□□□□ -0.9
HIF3A-201ENST00000244302 PRB2P02812 416 aaPredicted RBP9.41□□□□□ -0.9
HIF3A-201ENST00000244302 BOD1L2Q8IYS8 172 aa9.41□□□□□ -0.9
HIF3A-201ENST00000244302 IFI27L1Q96BM0 104 aa9.41□□□□□ -0.9
HIF3A-201ENST00000244302 LOC389332A0A1B0GUA5 103 aa9.41□□□□□ -0.9
HIF3A-201ENST00000244302 RNASE3P12724 160 aaKnown RBP9.41□□□□□ -0.9
HIF3A-201ENST00000244302 AZU1P20160 251 aa9.41□□□□□ -0.9
HIF3A-201ENST00000244302 C1orf158Q8N1D5 194 aa9.41□□□□□ -0.9
HIF3A-201ENST00000244302 MAP1LC3AQ9H492 121 aa9.41□□□□□ -0.9
HIF3A-201ENST00000244302 A6NDN8 102 aa9.4□□□□□ -0.9
HIF3A-201ENST00000244302 HSD52Q0P140 79 aa9.4□□□□□ -0.9
HIF3A-201ENST00000244302 FAM159AQ6UWV7 190 aa9.4□□□□□ -0.9
HIF3A-201ENST00000244302 NPYP01303 97 aa9.4□□□□□ -0.91
HIF3A-201ENST00000244302 PCP4P48539 62 aa9.4□□□□□ -0.91
HIF3A-201ENST00000244302 ANKRD39Q53RE8 183 aa9.4□□□□□ -0.91
HIF3A-201ENST00000244302 GTSCR1Q86UQ5 136 aa9.4□□□□□ -0.91
HIF3A-201ENST00000244302 NXT2Q9NPJ8 142 aaKnown RBP9.4□□□□□ -0.91
HIF3A-201ENST00000244302 CBY3A6NI87 242 aa9.39□□□□□ -0.91
HIF3A-201ENST00000244302 CACNG7P62955 275 aa9.39□□□□□ -0.91
HIF3A-201ENST00000244302 IGHV1OR15-1A0A075B7D0 117 aa9.38□□□□□ -0.91
HIF3A-201ENST00000244302 H3BRM9 83 aa9.38□□□□□ -0.91
HIF3A-201ENST00000244302 WIPF1O43516 503 aa9.38□□□□□ -0.91
HIF3A-201ENST00000244302 AMMECR1LQ6DCA0 310 aa9.38□□□□□ -0.91
HIF3A-201ENST00000244302 LINC01587Q99440 93 aa9.38□□□□□ -0.91
HIF3A-201ENST00000244302 JPT2Q9H910 190 aa9.38□□□□□ -0.91
HIF3A-201ENST00000244302 SMKR1H3BMG3 65 aa9.38□□□□□ -0.91
HIF3A-201ENST00000244302 GAS8-AS1O95177 125 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms