RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 TCL1BO95988 128 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 CFC1BP0CG36 223 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 CFC1P0CG37 223 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 SUMO4Q6EEV6 95 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 SPTBN4Q9H254 2564 aa9.29□□□□□ -0.92
NUP88-201ENST00000225696 POLR2KP53803 58 aaKnown RBP9.28□□□□□ -0.92
NUP88-201ENST00000225696 LY6EQ16553 131 aa9.28□□□□□ -0.92
NUP88-201ENST00000225696 FAM223BA6NKX1 122 aa9.27□□□□□ -0.92
NUP88-201ENST00000225696 EIF4EBP3O60516 100 aaPredicted RBP9.27□□□□□ -0.92
NUP88-201ENST00000225696 MT-ATP8P03928 68 aa9.27□□□□□ -0.92
NUP88-201ENST00000225696 KLRB1Q12918 225 aa9.27□□□□□ -0.92
NUP88-201ENST00000225696 FAM223AQ8IWN6 122 aa9.27□□□□□ -0.92
NUP88-201ENST00000225696 POM121L12Q8N7R1 296 aa9.27□□□□□ -0.92
NUP88-201ENST00000225696 AMELXQ99217 191 aa9.27□□□□□ -0.92
NUP88-201ENST00000225696 NDUFA4O00483 81 aa9.27□□□□□ -0.93
NUP88-201ENST00000225696 IGHV3-30P01768 117 aa9.27□□□□□ -0.93
NUP88-201ENST00000225696 IGHV3-30-5P0DP03 117 aa9.27□□□□□ -0.93
NUP88-201ENST00000225696 TMEM170BQ5T4T1 132 aa9.27□□□□□ -0.93
NUP88-201ENST00000225696 APRG1Q8IVJ8 170 aa9.27□□□□□ -0.93
NUP88-201ENST00000225696 RHPN1-AS1Q9BWJ2 59 aa9.27□□□□□ -0.93
NUP88-201ENST00000225696 PRORYQ9H606 182 aa9.27□□□□□ -0.93
NUP88-201ENST00000225696 MOB4Q9Y3A3 225 aa9.27□□□□□ -0.93
NUP88-201ENST00000225696 CSPG4Q6UVK1 2322 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 TMEM238LA0A1B0GVL6 79 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 A6NJY4 79 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 NXPH4O95158 308 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 XGP55808 180 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 CLUHP3Q96NS8 147 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 IGHV4OR15-8A0A075B7B6 117 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 A0A087WW49 117 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 F5H697 171 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 CKS1BP61024 79 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 BLCAPP62952 87 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 PMVKQ15126 192 aa9.26□□□□□ -0.93
NUP88-201ENST00000225696 TRAV12-3A0A0B4J271 114 aa9.25□□□□□ -0.93
NUP88-201ENST00000225696 SDHAF1A6NFY7 115 aa9.25□□□□□ -0.93
NUP88-201ENST00000225696 FAM74A4Q5TZK3 123 aa9.25□□□□□ -0.93
NUP88-201ENST00000225696 KIR2DL4Q99706 377 aa9.25□□□□□ -0.93
NUP88-201ENST00000225696 ZNF256Q9Y2P7 627 aaPredicted RBP9.25□□□□□ -0.93
NUP88-201ENST00000225696 CREBBPQ92793 2442 aa9.25□□□□□ -0.93
NUP88-201ENST00000225696 UTP20O75691 2785 aaKnown RBP9.25□□□□□ -0.93
NUP88-201ENST00000225696 ZANQ9Y493 2812 aa9.25□□□□□ -0.93
NUP88-201ENST00000225696 A0A1B0GV72 72 aa9.24□□□□□ -0.93
NUP88-201ENST00000225696 MED14OSP0DP75 135 aa9.24□□□□□ -0.93
NUP88-201ENST00000225696 SLC25A29Q8N8R3 303 aa9.24□□□□□ -0.93
NUP88-201ENST00000225696 ZNF580Q9UK33 172 aa9.24□□□□□ -0.93
NUP88-201ENST00000225696 IGHV3-64A0A075B6Q5 118 aa9.24□□□□□ -0.93
NUP88-201ENST00000225696 KLLNB2CW77 178 aa9.24□□□□□ -0.93
NUP88-201ENST00000225696 CRIP2P52943 208 aaPredicted RBP9.24□□□□□ -0.93
NUP88-201ENST00000225696 MDFICQ9P1T7 246 aa9.24□□□□□ -0.93
NUP88-201ENST00000225696 TRAV12-2A0A075B6T6 113 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 IGKV3-20P01619 116 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 SPINK8P0C7L1 97 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 IGHV4-38-2P0DP08 117 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 PF4V1P10720 104 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 ZNF876PQ49A33 203 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 Q5PR19 223 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 ATP6V0E2Q8NHE4 81 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 RAX2Q96IS3 184 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 DOPEY2Q9Y3R5 2298 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 IGHV1-69DA0A0B4J2H0 117 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 FAM159AQ6UWV7 190 aa9.23□□□□□ -0.93
NUP88-201ENST00000225696 J3QQQ9 107 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 VCYO14598 125 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 PPP1R17O96001 155 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 Q6ZUT4 128 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 C10orf126Q8N4M7 172 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 TRAV26-1A0A087WT03 109 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 IGHV1-69P01742 117 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 ELANEP08246 267 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 P0DMU3 169 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 FAM231AP0DMU4 169 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 FAM231CP0DMU5 169 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 HERVK_113P61574 105 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 TCTEX1D4Q5JR98 221 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 TRPT1Q86TN4 253 aaKnown RBP9.22□□□□□ -0.93
NUP88-201ENST00000225696 TEN1Q86WV5 123 aa9.22□□□□□ -0.93
NUP88-201ENST00000225696 TRBV27A0A0K0K1C4 114 aa9.21□□□□□ -0.94
NUP88-201ENST00000225696 A4D1N5 150 aa9.21□□□□□ -0.94
NUP88-201ENST00000225696 H7C2G1 150 aa9.21□□□□□ -0.94
NUP88-201ENST00000225696 CRYBA4P53673 196 aa9.21□□□□□ -0.94
NUP88-201ENST00000225696 TMEM95Q3KNT9 176 aa9.21□□□□□ -0.94
NUP88-201ENST00000225696 ANKRD29Q8N6D5 301 aa9.21□□□□□ -0.94
NUP88-201ENST00000225696 DCANP1Q8TF63 244 aa9.21□□□□□ -0.94
NUP88-201ENST00000225696 TIMM17AQ99595 171 aa9.21□□□□□ -0.94
NUP88-201ENST00000225696 FLNCQ14315 2725 aa9.2□□□□□ -0.94
NUP88-201ENST00000225696 H3BUX3 64 aa9.2□□□□□ -0.94
NUP88-201ENST00000225696 C19orf84I3L1E1 186 aa9.2□□□□□ -0.94
NUP88-201ENST00000225696 RPL32P62910 135 aaKnown RBP9.2□□□□□ -0.94
NUP88-201ENST00000225696 PPDPFLQ8WWR9 84 aa9.2□□□□□ -0.94
NUP88-201ENST00000225696 TMEM141Q96I45 108 aa9.2□□□□□ -0.94
NUP88-201ENST00000225696 PRO1854Q9UHT4 67 aa9.2□□□□□ -0.94
NUP88-201ENST00000225696 M0QY20 66 aa9.2□□□□□ -0.94
NUP88-201ENST00000225696 IGHV4-39P01824 125 aa9.2□□□□□ -0.94
NUP88-201ENST00000225696 SCGB1C2P0DMR2 95 aa9.2□□□□□ -0.94
NUP88-201ENST00000225696 SBSPONQ8IVN8 264 aa9.2□□□□□ -0.94
NUP88-201ENST00000225696 GEMIN7Q9H840 131 aaKnown RBP9.2□□□□□ -0.94
NUP88-201ENST00000225696 DAZ1Q9NQZ3 744 aaKnown RBP9.2□□□□□ -0.94
NUP88-201ENST00000225696 IGHG2P01859 326 aa9.19□□□□□ -0.94
NUP88-201ENST00000225696 PAPPA-AS1Q5QFB9 102 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms