RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 IGHV4-4A0A075B6R2 117 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 TRAV7A0A075B6U4 112 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 SND1-IT1Q9HBX3 110 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 PCNX1Q96RV3 2341 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 NLRC5Q86WI3 1866 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 KMT2EQ8IZD2 1858 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 NDUFS5O43920 106 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 DAZ2Q13117 558 aaKnown RBP3.64□□□□□ -1.83
SCN1A-220ENST00000641603 TRIP6Q15654 476 aaKnown RBP3.64□□□□□ -1.83
SCN1A-220ENST00000641603 DAZ4Q86SG3 579 aaKnown RBP3.64□□□□□ -1.83
SCN1A-220ENST00000641603 DAZ3Q9NR90 486 aaKnown RBP3.64□□□□□ -1.83
SCN1A-220ENST00000641603 ZNF581Q9P0T4 197 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 PIK3CD-AS1Q5SR53 167 aa3.64□□□□□ -1.83
SCN1A-220ENST00000641603 TRAV4A0A0B4J268 109 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 ODF3L1Q8IXM7 274 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 ZMAT4Q9H898 229 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 IGLV1-44P01699 117 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 TRBV12-3P01733 135 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 NREPQ16612 68 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 PHF3Q92576 2039 aaKnown RBP3.63□□□□□ -1.83
SCN1A-220ENST00000641603 TMEM89A2RUT3 159 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV3-30P01768 117 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 LINC00694P0DN24 101 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV3-30-5P0DP03 117 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 LINC00310P59036 64 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 ZNF524Q96C55 264 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 CACNA1IQ9P0X4 2223 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 TIRAPP58753 221 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 C5orf38Q86SI9 138 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 ARFGEF3Q5TH69 2177 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 I3L2K1 104 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 PATE2Q6UY27 113 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 GREB1Q4ZG55 1949 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 Q6ZR03 302 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 TMEM61Q8N0U2 210 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 ZNF295-AS1Q8N0V1 137 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 CACNA1BQ00975 2339 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 TEX22C9J3V5 150 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 UBE2E1P51965 193 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 SEC61GP60059 68 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 FAM19A3Q7Z5A8 133 aa3.63□□□□□ -1.83
SCN1A-220ENST00000641603 TRBV10-1A0A0K0K1A3 114 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 NPBQ8NG41 125 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 LINC01565O15544 149 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 ARRDC1-AS1Q9H2J1 176 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 IGKV1-17P01599 117 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 GATA3P23771 443 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 WFDC9Q8NEX5 89 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 TRBV6-5A0A0K0K1A5 114 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 SPAARA0A1B0GVQ0 90 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV3OR16-13A0A075B7E8 117 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 A0A087WWL8 130 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV3-74A0A0B4J1X5 117 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 IGKV3D-7A0A0C4DH55 119 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 WIPF1O43516 503 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 NRACQ8N912 160 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 COX7B2Q8TF08 81 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 RPP25Q9BUL9 199 aaKnown RBP3.62□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV4OR15-8A0A075B7B6 117 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 A0A087WW49 117 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 COX8CQ7Z4L0 72 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 MDS2Q8NDY4 140 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 MRPS12O15235 138 aaKnown RBP3.62□□□□□ -1.83
SCN1A-220ENST00000641603 TRIAP1O43715 76 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV3-30-3P0DP02 117 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 ANAPC1Q9H1A4 1944 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV7-4-1A0A0J9YVY3 117 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 ZNF625Q96I27 306 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-220ENST00000641603 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.62□□□□□ -1.838e-7■■■■□ 21.2
SCN1A-220ENST00000641603 TMEM223A0PJW6 202 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 ELANEP08246 267 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 ITLN2Q8WWU7 325 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-220ENST00000641603 PRR15LQ9BU68 103 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 TRGV1A0A0A0MS02 117 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 IGLV2-14P01704 120 aa3.62□□□□□ -1.83
SCN1A-220ENST00000641603 A0A0J9YXV3 536 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 SUMO4Q6EEV6 95 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 IGKV3OR2-268A0A0C4DH90 116 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 C9orf106Q8NAJ2 232 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 LRRK1Q38SD2 2015 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 IGLV11-55A0A075B6I3 123 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 TRAV26-2A0A0B4J265 109 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 IBA57-AS1B1ANH7 110 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 NDUFA1O15239 70 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 GDF5OSQ5U4N7 250 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 F8WDY8 70 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 FSTL3O95633 263 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 WT1P19544 449 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-220ENST00000641603 PTPRDP23468 1912 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 A0A0U1RRA0 63 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 A0A1W2PRX2 142 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 WDR90Q96KV7 1748 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 LPAL2Q16609 132 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 WDR86Q86TI4 376 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 KIAA1671Q9BY89 1806 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 LHBP01229 141 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 NKAPP1Q8N9T2 125 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 ABCA4P78363 2273 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 DENND4CQ5VZ89 1909 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV3-49A0A0A0MS15 119 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms