RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 DNAJC30Q96LL9 226 aa9.85□□□□□ -0.83
SYNE2-228ENST00000639659 FAT3Q8TDW7 4589 aa9.84□□□□□ -0.83
SYNE2-228ENST00000639659 LGALSLQ3ZCW2 172 aaPredicted RBP9.84□□□□□ -0.83
SYNE2-228ENST00000639659 Q8N976 141 aa9.84□□□□□ -0.83
SYNE2-228ENST00000639659 C9orf85Q96MD7 179 aa9.84□□□□□ -0.83
SYNE2-228ENST00000639659 SH3BGRL3Q9H299 93 aa9.84□□□□□ -0.83
SYNE2-228ENST00000639659 COX11Q9Y6N1 276 aa9.84□□□□□ -0.83
SYNE2-228ENST00000639659 TAAR5O14804 337 aa9.83□□□□□ -0.84
SYNE2-228ENST00000639659 KRTAP10-4P60372 401 aaPredicted RBP9.83□□□□□ -0.84
SYNE2-228ENST00000639659 ZFP69Q49AA0 526 aa9.83□□□□□ -0.84
SYNE2-228ENST00000639659 UBE2WQ96B02 151 aa9.83□□□□□ -0.84
SYNE2-228ENST00000639659 PARLQ9H300 379 aa9.83□□□□□ -0.84
SYNE2-228ENST00000639659 KLK12Q9UKR0 248 aa9.83□□□□□ -0.84
SYNE2-228ENST00000639659 S100A4P26447 101 aaKnown RBP9.82□□□□□ -0.84
SYNE2-228ENST00000639659 RAB2AP61019 212 aa9.82□□□□□ -0.84
SYNE2-228ENST00000639659 RPL37AP61513 92 aaKnown RBP9.82□□□□□ -0.84
SYNE2-228ENST00000639659 ASAH1Q13510 395 aa9.82□□□□□ -0.84
SYNE2-228ENST00000639659 ACOT6Q3I5F7 207 aaPredicted RBP9.82□□□□□ -0.84
SYNE2-228ENST00000639659 PQLC2Q6ZP29 291 aa9.82□□□□□ -0.84
SYNE2-228ENST00000639659 PRNTQ86SH4 94 aa9.82□□□□□ -0.84
SYNE2-228ENST00000639659 CYB561D1Q8N8Q1 229 aa9.82□□□□□ -0.84
SYNE2-228ENST00000639659 SAMD10Q9BYL1 202 aa9.82□□□□□ -0.84
SYNE2-228ENST00000639659 Q9UF83 564 aa9.82□□□□□ -0.84
SYNE2-228ENST00000639659 HSPB11Q9Y547 144 aa9.82□□□□□ -0.84
SYNE2-228ENST00000639659 K7EQM0 130 aa9.81□□□□□ -0.84
SYNE2-228ENST00000639659 RNASE3P12724 160 aaKnown RBP9.81□□□□□ -0.84
SYNE2-228ENST00000639659 MZT2BQ6NZ67 158 aa9.81□□□□□ -0.84
SYNE2-228ENST00000639659 C14orf178Q8N769 122 aaPredicted RBP9.81□□□□□ -0.84
SYNE2-228ENST00000639659 PSG8Q9UQ74 426 aa9.81□□□□□ -0.84
SYNE2-228ENST00000639659 A0A087WWC5 75 aa9.8□□□□□ -0.84
SYNE2-228ENST00000639659 RNF222A6NCQ9 220 aa9.8□□□□□ -0.84
SYNE2-228ENST00000639659 SMUG1Q53HV7 270 aa9.8□□□□□ -0.84
SYNE2-228ENST00000639659 KCNIP4Q6PIL6 250 aa9.8□□□□□ -0.84
SYNE2-228ENST00000639659 JPT2Q9H910 190 aa9.8□□□□□ -0.84
SYNE2-228ENST00000639659 A0A087WX48 190 aa9.79□□□□□ -0.84
SYNE2-228ENST00000639659 A8MWV9 139 aa9.79□□□□□ -0.84
SYNE2-228ENST00000639659 TCRAP04437 139 aa9.79□□□□□ -0.84
SYNE2-228ENST00000639659 ARL14EPLP0DKL9 152 aa9.79□□□□□ -0.84
SYNE2-228ENST00000639659 LINC00694P0DN24 101 aa9.79□□□□□ -0.84
SYNE2-228ENST00000639659 FAM74A4Q5TZK3 123 aa9.79□□□□□ -0.84
SYNE2-228ENST00000639659 ENKURQ8TC29 256 aa9.79□□□□□ -0.84
SYNE2-228ENST00000639659 PPP1R1CQ8WVI7 109 aa9.79□□□□□ -0.84
SYNE2-228ENST00000639659 CCDC32Q9BV29 185 aa9.79□□□□□ -0.84
SYNE2-228ENST00000639659 SERTM2A0A1B0GWG4 89 aa9.78□□□□□ -0.84
SYNE2-228ENST00000639659 SEC11BP0C7V7 166 aa9.78□□□□□ -0.84
SYNE2-228ENST00000639659 RPL12P30050 165 aaKnown RBP9.78□□□□□ -0.84
SYNE2-228ENST00000639659 FGF8P55075 233 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-228ENST00000639659 CYCSP99999 105 aaKnown RBP9.78□□□□□ -0.84
SYNE2-228ENST00000639659 FLI1Q01543 452 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-228ENST00000639659 ZFP2Q6ZN57 461 aa9.78□□□□□ -0.84
SYNE2-228ENST00000639659 NIT1Q86X76 327 aa9.78□□□□□ -0.84
SYNE2-228ENST00000639659 ARL6IP6Q8N6S5 226 aa9.78□□□□□ -0.84
SYNE2-228ENST00000639659 C5orf17Q8NAS9 161 aa9.78□□□□□ -0.84
SYNE2-228ENST00000639659 OR10G9Q8NGN4 311 aa9.78□□□□□ -0.84
SYNE2-228ENST00000639659 OR10G7Q8NGN6 311 aa9.78□□□□□ -0.84
SYNE2-228ENST00000639659 H3BVH4 76 aa9.77□□□□□ -0.85
SYNE2-228ENST00000639659 ASIPP42127 132 aa9.77□□□□□ -0.85
SYNE2-228ENST00000639659 CDC34P49427 236 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-228ENST00000639659 HNRNPA3P51991 378 aaKnown RBP9.77□□□□□ -0.85
SYNE2-228ENST00000639659 DMRTA1Q5VZB9 504 aa9.77□□□□□ -0.85
SYNE2-228ENST00000639659 PTH2Q96A98 100 aa9.77□□□□□ -0.85
SYNE2-228ENST00000639659 WFDC1Q9HC57 220 aa9.77□□□□□ -0.85
SYNE2-228ENST00000639659 IGLV2-11P01706 119 aa9.76□□□□□ -0.85
SYNE2-228ENST00000639659 PET100P0DJ07 73 aa9.76□□□□□ -0.85
SYNE2-228ENST00000639659 OR2G3Q8NGZ4 309 aa9.76□□□□□ -0.85
SYNE2-228ENST00000639659 LINC00479Q96M42 142 aa9.76□□□□□ -0.85
SYNE2-228ENST00000639659 C1orf43Q9BWL3 253 aa9.76□□□□□ -0.85
SYNE2-228ENST00000639659 TMEM262E9PQX1 116 aa9.75□□□□□ -0.85
SYNE2-228ENST00000639659 MPC2O95563 127 aa9.75□□□□□ -0.85
SYNE2-228ENST00000639659 HLA-DQA1P01909 254 aa9.75□□□□□ -0.85
SYNE2-228ENST00000639659 CRPP02741 224 aa9.75□□□□□ -0.85
SYNE2-228ENST00000639659 H2BFSP57053 126 aa9.75□□□□□ -0.85
SYNE2-228ENST00000639659 SUMO1P63165 101 aaKnown RBP9.75□□□□□ -0.85
SYNE2-228ENST00000639659 ELOBQ15370 118 aa9.75□□□□□ -0.85
SYNE2-228ENST00000639659 C14orf177Q52M58 125 aa9.75□□□□□ -0.85
SYNE2-228ENST00000639659 A0A087WWL8 130 aa9.74□□□□□ -0.85
SYNE2-228ENST00000639659 TRAV34A0A0B4J273 112 aa9.74□□□□□ -0.85
SYNE2-228ENST00000639659 IGKV3D-20A0A0C4DH25 116 aa9.74□□□□□ -0.85
SYNE2-228ENST00000639659 M0R036 132 aa9.74□□□□□ -0.85
SYNE2-228ENST00000639659 SSNA1O43805 119 aa9.74□□□□□ -0.85
SYNE2-228ENST00000639659 GCHFRP30047 84 aa9.74□□□□□ -0.85
SYNE2-228ENST00000639659 B4DEV8 164 aa9.73□□□□□ -0.85
SYNE2-228ENST00000639659 RHODO00212 210 aa9.73□□□□□ -0.85
SYNE2-228ENST00000639659 SAPCD1Q5SSQ6 148 aa9.73□□□□□ -0.85
SYNE2-228ENST00000639659 C15orf54Q8N8G6 183 aa9.73□□□□□ -0.85
SYNE2-228ENST00000639659 HSD17B11Q8NBQ5 300 aa9.73□□□□□ -0.85
SYNE2-228ENST00000639659 DAZAP1Q96EP5 407 aaKnown RBP9.73□□□□□ -0.85
SYNE2-228ENST00000639659 NDUFA13Q9P0J0 144 aa9.73□□□□□ -0.85
SYNE2-228ENST00000639659 EPDR1Q9UM22 224 aa9.73□□□□□ -0.85
SYNE2-228ENST00000639659 PKHD1L1Q86WI1 4243 aa9.73□□□□□ -0.85
SYNE2-228ENST00000639659 GRIFINA4D1Z8 144 aa9.72□□□□□ -0.85
SYNE2-228ENST00000639659 INMT-MINDY4F8WBC2 141 aa9.72□□□□□ -0.85
SYNE2-228ENST00000639659 STAG3L2P0CL84 134 aa9.72□□□□□ -0.85
SYNE2-228ENST00000639659 STAG3L3P0CL85 134 aa9.72□□□□□ -0.85
SYNE2-228ENST00000639659 Q0VG73 95 aa9.72□□□□□ -0.85
SYNE2-228ENST00000639659 UFSP1Q6NVU6 142 aa9.72□□□□□ -0.85
SYNE2-228ENST00000639659 OR11H4Q8NGC9 324 aa9.72□□□□□ -0.85
SYNE2-228ENST00000639659 RAB24Q969Q5 203 aa9.72□□□□□ -0.85
SYNE2-228ENST00000639659 ARL2-SNX15V9GYD0 113 aa9.72□□□□□ -0.85
SYNE2-228ENST00000639659 USP17L23D6RBM5 183 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms