RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 PROP1O75360 226 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 IL15RAQ13261 267 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 C20orf78Q9BR46 151 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 C14orf132Q9NPU4 83 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 FAM215AQ9Y5M1 114 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 ZFP2Q6ZN57 461 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 ZNF843Q8N446 348 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 ARHGAP32A7KAX9 2087 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 AGRNO00468 2067 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 FAM231BA6NCW3 169 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 P0DMU3 169 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 FAM231AP0DMU4 169 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 FAM231CP0DMU5 169 aa4.83□□□□□ -1.64
SCN1A-217ENST00000637988 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-217ENST00000637988 ETV2O00321 342 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-217ENST00000637988 TMEM14EPQ6UXP3 125 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 VSIG2Q96IQ7 327 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 NRGNQ92686 78 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 VSIRQ9H7M9 311 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 LY6G6EA0A0G2JKS1 128 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 C2orf70A6NJV1 201 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 TMEM263Q8WUH6 116 aaKnown RBP4.82□□□□□ -1.64
SCN1A-217ENST00000637988 VOPP1Q96AW1 172 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 DEFB131BA0A096LNP1 70 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 C17orf58Q2M2W7 97 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 ADAMTSL5Q6ZMM2 481 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 C20orf144Q9BQM9 153 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 ZNF706Q9Y5V0 76 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-217ENST00000637988 A0A087WZ39 114 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 SMIM9A6NGZ8 99 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 PRR20EP86478 221 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 PRR20CP86479 221 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 PRR20DP86480 221 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 PRR20BP86481 221 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 PRR20AP86496 221 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 COL4A6Q14031 1691 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 IGHV4OR15-8A0A075B7B6 117 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 A0A087WW49 117 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 TRAV4A0A0B4J268 109 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 IGHV4-28A0A0C4DH34 117 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 RS1O15537 224 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 IGKV4-1P06312 121 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 ADORA2A-AS1P86434 159 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 HIGD2BQ4VC39 106 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 HIST2H2BCQ6DN03 193 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 CRIPAKQ8N1N5 446 aa4.82□□□□□ -1.64
SCN1A-217ENST00000637988 TRAV1-1A0A0B4J248 108 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 PRR25Q96S07 402 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 A0A1B0GX51 115 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 NUPR2A6NF83 97 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 ZC2HC1BQ5TFG8 222 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 C5orf38Q86SI9 138 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 COL4A1P02462 1669 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 C5orf56Q8N8D9 126 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 KLK12Q9UKR0 248 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 GRNP28799 593 aaKnown RBP4.81□□□□□ -1.64
SCN1A-217ENST00000637988 PCNX3Q9H6A9 2034 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 CTSGP08311 255 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 NPBQ8NG41 125 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 IGFBPL1Q8WX77 278 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 LYRM9A8MSI8 78 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 LINC01545Q5VT33 79 aa4.81□□□□□ -1.64
SCN1A-217ENST00000637988 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-217ENST00000637988 IGKV2-29A2NJV5 120 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-217ENST00000637988 COX7B2Q8TF08 81 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 OPRPNQ99935 248 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-217ENST00000637988 ESM1Q9NQ30 184 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 ZNRD1Q9P1U0 126 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 CARHSP1Q9Y2V2 147 aaKnown RBP4.8□□□□□ -1.64
SCN1A-217ENST00000637988 TRAV10A0A0B4J240 114 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 SYS1-DBNDD2H3BUS1 97 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 LINC01620Q4KN68 170 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 PRSS47A8MTI9 375 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 FAM104BQ5XKR9 115 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 IGHG2P01859 326 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 NREPQ16612 68 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 DYNAPQ8N1N2 210 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 PRO0255Q9UI72 69 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 IGKV2-24A0A0C4DH68 120 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 IGKV1-6A0A0C4DH72 117 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 DEFB4AO15263 64 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 U3KQA8 63 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 H0YIZ8 118 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 FOXL2NBQ6ZUU3 175 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 RNF126Q9BV68 326 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 NDUFS7O75251 213 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 LINC00474Q9P2X8 69 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 LTBP2Q14767 1821 aa4.8□□□□□ -1.64
SCN1A-217ENST00000637988 TRAV26-2A0A0B4J265 109 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 PLA2G2AP14555 144 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 RNASE13Q5GAN3 156 aaKnown RBP4.79□□□□□ -1.64
SCN1A-217ENST00000637988 IGFL2Q6UWQ7 119 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 Q9H8V8 135 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 ZFHX2Q9C0A1 2572 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-217ENST00000637988 LY6G6DO95868 133 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 SPAG11BQ08648 103 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 C5orf47Q569G3 176 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 DIRC1Q969H9 104 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 FGF6P10767 208 aa4.79□□□□□ -1.64
SCN1A-217ENST00000637988 WFDC9Q8NEX5 89 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms