RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 SORL1Q92673 2214 aa10.58□□□□□ -0.72
CLN3-242ENST00000635958 GOLT1AQ6ZVE7 132 aa10.57□□□□□ -0.72
CLN3-242ENST00000635958 COX8CQ7Z4L0 72 aa10.57□□□□□ -0.72
CLN3-242ENST00000635958 RNF182Q8N6D2 247 aa10.57□□□□□ -0.72
CLN3-242ENST00000635958 C20orf173Q96LM9 149 aa10.57□□□□□ -0.72
CLN3-242ENST00000635958 PSG8Q9UQ74 426 aa10.57□□□□□ -0.72
CLN3-242ENST00000635958 CT45A10P0DMU9 189 aa10.56□□□□□ -0.72
CLN3-242ENST00000635958 LINC01545Q5VT33 79 aa10.56□□□□□ -0.72
CLN3-242ENST00000635958 WFDC3Q8IUB2 231 aa10.56□□□□□ -0.72
CLN3-242ENST00000635958 OR10AG1Q8NH19 301 aa10.56□□□□□ -0.72
CLN3-242ENST00000635958 HIST1H1AQ02539 215 aaPredicted RBP10.56□□□□□ -0.72
CLN3-242ENST00000635958 SAPCD1Q5SSQ6 148 aa10.56□□□□□ -0.72
CLN3-242ENST00000635958 FA2HQ7L5A8 372 aa10.56□□□□□ -0.72
CLN3-242ENST00000635958 MCRIP2Q9BUT9 160 aaKnown RBP10.56□□□□□ -0.72
CLN3-242ENST00000635958 SCRT2Q9NQ03 307 aa10.56□□□□□ -0.72
CLN3-242ENST00000635958 AP5S1Q9NUS5 200 aa10.56□□□□□ -0.72
CLN3-242ENST00000635958 ZNF256Q9Y2P7 627 aaPredicted RBP10.56□□□□□ -0.72
CLN3-242ENST00000635958 TRRAPQ9Y4A5 3859 aa10.56□□□□□ -0.72
CLN3-242ENST00000635958 RBAKDNA6NC62 111 aa10.55□□□□□ -0.72
CLN3-242ENST00000635958 SNRPD3P62318 126 aaKnown RBP10.55□□□□□ -0.72
CLN3-242ENST00000635958 C9orf66Q5T8R8 295 aa10.55□□□□□ -0.72
CLN3-242ENST00000635958 PRAC2D3DTV9 90 aa10.54□□□□□ -0.72
CLN3-242ENST00000635958 MAJINQ3KP22 176 aa10.54□□□□□ -0.72
CLN3-242ENST00000635958 PRSS3P2Q8NHM4 247 aa10.54□□□□□ -0.72
CLN3-242ENST00000635958 SGK494Q96LW2 274 aa10.54□□□□□ -0.72
CLN3-242ENST00000635958 WIPF1O43516 503 aa10.54□□□□□ -0.72
CLN3-242ENST00000635958 LINC01559Q495D7 138 aa10.54□□□□□ -0.72
CLN3-242ENST00000635958 DEFB125Q8N687 156 aa10.54□□□□□ -0.72
CLN3-242ENST00000635958 U3KQK5 164 aa10.54□□□□□ -0.72
CLN3-242ENST00000635958 CCL25O15444 150 aa10.53□□□□□ -0.72
CLN3-242ENST00000635958 IGKV2-40A0A087WW87 121 aaPredicted RBP10.52□□□□□ -0.73
CLN3-242ENST00000635958 IGKV2D-40P01614 121 aaPredicted RBP10.52□□□□□ -0.73
CLN3-242ENST00000635958 ZNF688P0C7X2 276 aa10.52□□□□□ -0.73
CLN3-242ENST00000635958 COX8AP10176 69 aa10.52□□□□□ -0.73
CLN3-242ENST00000635958 BEAN1Q3B7T3 259 aa10.52□□□□□ -0.73
CLN3-242ENST00000635958 BVES-AS1Q5T3Y7 98 aa10.52□□□□□ -0.73
CLN3-242ENST00000635958 C9orf47Q6ZRZ4 202 aa10.52□□□□□ -0.73
CLN3-242ENST00000635958 ZC2HC1AQ96GY0 325 aa10.52□□□□□ -0.73
CLN3-242ENST00000635958 TMEM189A5PLL7 270 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 SEC11AP67812 179 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 OR4C5Q8NGB2 326 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 VGLL1Q99990 258 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 TRAV8-1A0A0A6YYK1 113 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 SIVA1O15304 175 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 CMC4P56277 68 aaPredicted RBP10.51□□□□□ -0.73
CLN3-242ENST00000635958 LGALS9BQ3B8N2 356 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 LGALS9CQ6DKI2 356 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 OR8A1Q8NGG7 326 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 FAM110AQ9BQ89 295 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 AGPAT4-IT1Q9H0P7 198 aa10.51□□□□□ -0.73
CLN3-242ENST00000635958 NUDT3O95989 172 aa10.5□□□□□ -0.73
CLN3-242ENST00000635958 ARMS2P0C7Q2 107 aa10.5□□□□□ -0.73
CLN3-242ENST00000635958 VAMP3Q15836 100 aa10.5□□□□□ -0.73
CLN3-242ENST00000635958 LINC00477Q96M19 166 aa10.5□□□□□ -0.73
CLN3-242ENST00000635958 hDV102S1A0JD36 115 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 PRB4P10163 310 aaPredicted RBP10.49□□□□□ -0.73
CLN3-242ENST00000635958 MPV17L2Q567V2 206 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 FAM104BQ5XKR9 115 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 ORMDL3Q8N138 153 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 OR10J6PQ8NGY7 276 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 MAP6D1Q9H9H5 199 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 PKD1L1Q8TDX9 2849 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 A0A0J9YX75 114 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 F6UB75 175 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 PPBPP02775 128 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 CDKN1BP46527 198 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 DEFB131AP59861 70 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 DEFB1P60022 68 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 ERCC8Q13216 396 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 ODF3L2Q3SX64 289 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 FOXI2Q6ZQN5 318 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 LENEPQ9Y5L5 61 aa10.49□□□□□ -0.73
CLN3-242ENST00000635958 TAX1BP3O14907 124 aa10.48□□□□□ -0.73
CLN3-242ENST00000635958 ZNF138P52744 262 aa10.48□□□□□ -0.73
CLN3-242ENST00000635958 PRR31Q5SQ13 230 aa10.48□□□□□ -0.73
CLN3-242ENST00000635958 TMEM78Q5T7P6 136 aa10.48□□□□□ -0.73
CLN3-242ENST00000635958 LINC00173Q6ZV60 143 aa10.48□□□□□ -0.73
CLN3-242ENST00000635958 PRR25Q96S07 402 aa10.48□□□□□ -0.73
CLN3-242ENST00000635958 TRBV7-9A0A0J9YWB2 115 aa10.47□□□□□ -0.73
CLN3-242ENST00000635958 PRELID3AQ96N28 172 aa10.47□□□□□ -0.73
CLN3-242ENST00000635958 C19orf73Q9NVV2 129 aa10.47□□□□□ -0.73
CLN3-242ENST00000635958 A8MTW9 85 aa10.47□□□□□ -0.73
CLN3-242ENST00000635958 DUSP14O95147 198 aaKnown RBP10.47□□□□□ -0.73
CLN3-242ENST00000635958 CRIP1P50238 77 aa10.47□□□□□ -0.73
CLN3-242ENST00000635958 FAM19A4Q96LR4 140 aa10.47□□□□□ -0.73
CLN3-242ENST00000635958 A6NDN8 102 aa10.46□□□□□ -0.74
CLN3-242ENST00000635958 OR11H12B2RN74 326 aa10.46□□□□□ -0.74
CLN3-242ENST00000635958 HBDP02042 147 aa10.46□□□□□ -0.74
CLN3-242ENST00000635958 LYZL1Q6UWQ5 148 aa10.46□□□□□ -0.74
CLN3-242ENST00000635958 CLUHP3Q96NS8 147 aa10.46□□□□□ -0.74
CLN3-242ENST00000635958 ODF3Q96PU9 254 aa10.46□□□□□ -0.74
CLN3-242ENST00000635958 H3BMM0 161 aa10.45□□□□□ -0.74
CLN3-242ENST00000635958 SH2D1AO60880 128 aa10.45□□□□□ -0.74
CLN3-242ENST00000635958 CD7P09564 240 aa10.45□□□□□ -0.74
CLN3-242ENST00000635958 HLA-DRB4P13762 266 aa10.45□□□□□ -0.74
CLN3-242ENST00000635958 TMEM97Q5BJF2 176 aa10.45□□□□□ -0.74
CLN3-242ENST00000635958 Q8TAT8 98 aa10.45□□□□□ -0.74
CLN3-242ENST00000635958 HLA-DRB4X5D2U9 266 aa10.45□□□□□ -0.74
CLN3-242ENST00000635958 AGRNO00468 2067 aa10.45□□□□□ -0.74
CLN3-242ENST00000635958 LINC01546A6NGU7 62 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms