RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 H3BMM0 161 aa10.66□□□□□ -0.7
LINC00339-208ENST00000634934 DUSP14O95147 198 aaKnown RBP10.66□□□□□ -0.7
LINC00339-208ENST00000634934 BTF3P20290 206 aaKnown RBP10.66□□□□□ -0.7
LINC00339-208ENST00000634934 SPATA45Q537H7 98 aa10.66□□□□□ -0.7
LINC00339-208ENST00000634934 COL5A1-AS1Q5SY13 56 aa10.66□□□□□ -0.7
LINC00339-208ENST00000634934 DAZAP1Q96EP5 407 aaKnown RBP10.66□□□□□ -0.7
LINC00339-208ENST00000634934 VGLL1Q99990 258 aa10.66□□□□□ -0.7
LINC00339-208ENST00000634934 K7EQM0 130 aa10.65□□□□□ -0.7
LINC00339-208ENST00000634934 SPINK4O60575 86 aa10.65□□□□□ -0.7
LINC00339-208ENST00000634934 IGHV4-30-4P0DP06 118 aa10.65□□□□□ -0.7
LINC00339-208ENST00000634934 RPL35AP18077 110 aaKnown RBP10.65□□□□□ -0.7
LINC00339-208ENST00000634934 GTSF1Q8WW33 167 aa10.65□□□□□ -0.7
LINC00339-208ENST00000634934 SGK494Q96LW2 274 aa10.65□□□□□ -0.7
LINC00339-208ENST00000634934 PPP1R14DQ9NXH3 145 aa10.65□□□□□ -0.7
LINC00339-208ENST00000634934 TRAV9-2A0A087WT02 112 aa10.64□□□□□ -0.71
LINC00339-208ENST00000634934 LINC00614P0C842 121 aa10.64□□□□□ -0.71
LINC00339-208ENST00000634934 TMEM78Q5T7P6 136 aa10.64□□□□□ -0.71
LINC00339-208ENST00000634934 AGPAT4-IT1Q9H0P7 198 aa10.64□□□□□ -0.71
LINC00339-208ENST00000634934 LOC102724200A0A096LPH7 203 aaPredicted RBP10.63□□□□□ -0.71
LINC00339-208ENST00000634934 TRAV8-1A0A0A6YYK1 113 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 RBAKDNA6NC62 111 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 K7EIL1 84 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 M0R2Z0 102 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 TRPT1Q86TN4 253 aaKnown RBP10.63□□□□□ -0.71
LINC00339-208ENST00000634934 DLEU1O43261 78 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 DEFB121Q5J5C9 76 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 PRR27Q6MZM9 219 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 LINC00322Q6ZN03 302 aaPredicted RBP10.63□□□□□ -0.71
LINC00339-208ENST00000634934 C9orf47Q6ZRZ4 202 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 Q8TAT8 98 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 URB1-AS1Q96HZ7 61 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 LINC00477Q96M19 166 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 ASCL2Q99929 193 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 TMEM70Q9BUB7 260 aa10.63□□□□□ -0.71
LINC00339-208ENST00000634934 AGRNO00468 2067 aa10.62□□□□□ -0.71
LINC00339-208ENST00000634934 RBMY1BA6NDE4 496 aaKnown RBP10.62□□□□□ -0.71
LINC00339-208ENST00000634934 RBMY1EA6NEQ0 496 aaKnown RBP10.62□□□□□ -0.71
LINC00339-208ENST00000634934 RBMY1DP0C7P1 496 aaKnown RBP10.62□□□□□ -0.71
LINC00339-208ENST00000634934 CT45A10P0DMU9 189 aa10.62□□□□□ -0.71
LINC00339-208ENST00000634934 ZNF138P52744 262 aa10.62□□□□□ -0.71
LINC00339-208ENST00000634934 FXYD7P58549 80 aa10.62□□□□□ -0.71
LINC00339-208ENST00000634934 RIGQ13278 110 aa10.62□□□□□ -0.71
LINC00339-208ENST00000634934 ZNF493Q6ZR52 646 aa10.62□□□□□ -0.71
LINC00339-208ENST00000634934 PRNTQ86SH4 94 aa10.62□□□□□ -0.71
LINC00339-208ENST00000634934 ST20Q9HBF5 79 aa10.62□□□□□ -0.71
LINC00339-208ENST00000634934 PSG8Q9UQ74 426 aa10.62□□□□□ -0.71
LINC00339-208ENST00000634934 A0A1B0GUT8 65 aa10.61□□□□□ -0.71
LINC00339-208ENST00000634934 SPATA12Q7Z6I5 190 aa10.61□□□□□ -0.71
LINC00339-208ENST00000634934 J3KRW8 73 aa10.6□□□□□ -0.71
LINC00339-208ENST00000634934 PET117Q6UWS5 81 aa10.6□□□□□ -0.71
LINC00339-208ENST00000634934 AMTNQ6UX39 209 aa10.6□□□□□ -0.71
LINC00339-208ENST00000634934 FAM19A2Q8N3H0 131 aa10.6□□□□□ -0.71
LINC00339-208ENST00000634934 MRAPQ8TCY5 172 aa10.6□□□□□ -0.71
LINC00339-208ENST00000634934 TMEM208Q9BTX3 173 aa10.6□□□□□ -0.71
LINC00339-208ENST00000634934 LAMTOR2Q9Y2Q5 125 aa10.6□□□□□ -0.71
LINC00339-208ENST00000634934 A8MTW9 85 aa10.59□□□□□ -0.71
LINC00339-208ENST00000634934 NTF3P20783 257 aa10.59□□□□□ -0.71
LINC00339-208ENST00000634934 TSPOP30536 169 aa10.59□□□□□ -0.71
LINC00339-208ENST00000634934 LEPP41159 167 aa10.59□□□□□ -0.71
LINC00339-208ENST00000634934 CAMPP49913 170 aa10.59□□□□□ -0.71
LINC00339-208ENST00000634934 HNRNPA3P51991 378 aaKnown RBP10.59□□□□□ -0.71
LINC00339-208ENST00000634934 SPINK13Q1W4C9 94 aa10.59□□□□□ -0.71
LINC00339-208ENST00000634934 OR2D3Q8NGH3 330 aa10.59□□□□□ -0.71
LINC00339-208ENST00000634934 CLUHP3Q96NS8 147 aa10.59□□□□□ -0.71
LINC00339-208ENST00000634934 TGP01266 2768 aa10.59□□□□□ -0.71
LINC00339-208ENST00000634934 A8MZ25 164 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 RNASEKQ6P5S7 137 aaKnown RBP10.58□□□□□ -0.72
LINC00339-208ENST00000634934 MORN3Q6PF18 240 aaPredicted RBP10.58□□□□□ -0.72
LINC00339-208ENST00000634934 CSTL1Q9H114 145 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 XCL2Q9UBD3 114 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 HSPB8Q9UJY1 196 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 IGHV1-24A0A0C4DH33 117 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 SYS1-DBNDD2H3BUS1 97 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 APOC4P55056 127 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 Q6ZN92 141 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 ORAOV1Q8WV07 137 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 PGLYRP4Q96LB8 373 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 ODF3Q96PU9 254 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 SSBP4Q9BWG4 385 aaPredicted RBP10.58□□□□□ -0.72
LINC00339-208ENST00000634934 U3KQK5 164 aa10.58□□□□□ -0.72
LINC00339-208ENST00000634934 TRAV12-2A0A075B6T6 113 aa10.57□□□□□ -0.72
LINC00339-208ENST00000634934 ZNF25P17030 456 aaPredicted RBP10.57□□□□□ -0.72
LINC00339-208ENST00000634934 CDKN1BP46527 198 aa10.57□□□□□ -0.72
LINC00339-208ENST00000634934 RPS20P60866 119 aaKnown RBP10.57□□□□□ -0.72
LINC00339-208ENST00000634934 SAPCD1Q5SSQ6 148 aa10.57□□□□□ -0.72
LINC00339-208ENST00000634934 ZC2HC1AQ96GY0 325 aa10.57□□□□□ -0.72
LINC00339-208ENST00000634934 FAM19A4Q96LR4 140 aa10.57□□□□□ -0.72
LINC00339-208ENST00000634934 TMEM191AQ9H0A3 160 aa10.57□□□□□ -0.72
LINC00339-208ENST00000634934 GOLT1BQ9Y3E0 138 aa10.57□□□□□ -0.72
LINC00339-208ENST00000634934 LENEPQ9Y5L5 61 aa10.57□□□□□ -0.72
LINC00339-208ENST00000634934 LEPROTL1O95214 131 aa10.56□□□□□ -0.72
LINC00339-208ENST00000634934 KIR3DS1Q14943 382 aa10.56□□□□□ -0.72
LINC00339-208ENST00000634934 KIR2DL5BQ8NHK3 375 aa10.56□□□□□ -0.72
LINC00339-208ENST00000634934 C8orf49Q96NF6 230 aa10.56□□□□□ -0.72
LINC00339-208ENST00000634934 TRBV7-9A0A0J9YWB2 115 aa10.55□□□□□ -0.72
LINC00339-208ENST00000634934 GIG44P09565 113 aaPredicted RBP10.55□□□□□ -0.72
LINC00339-208ENST00000634934 RNASE4P34096 147 aaKnown RBP10.55□□□□□ -0.72
LINC00339-208ENST00000634934 ZFAND2AQ8N6M9 145 aa10.55□□□□□ -0.72
LINC00339-208ENST00000634934 C1QTNF4Q9BXJ3 329 aa10.55□□□□□ -0.72
LINC00339-208ENST00000634934 PRR9Q5T870 116 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms