RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 RIF1Q5UIP0 2472 aaKnown RBP6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 PCP2Q8IVA1 136 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 MTURNQ8N3F0 131 aa6.85□□□□□ -1.31
PDLIM5-222ENST00000615540 COX8AP10176 69 aa6.84□□□□□ -1.31
PDLIM5-222ENST00000615540 LINC01559Q495D7 138 aa6.84□□□□□ -1.31
PDLIM5-222ENST00000615540 SMIM2Q9BVW6 85 aa6.84□□□□□ -1.31
PDLIM5-222ENST00000615540 TP53TG3Q9ULZ0 132 aa6.84□□□□□ -1.31
PDLIM5-222ENST00000615540 TPRP12270 2363 aaKnown RBP6.84□□□□□ -1.31
PDLIM5-222ENST00000615540 TNFRSF13BO14836 293 aaPredicted RBP6.84□□□□□ -1.31
PDLIM5-222ENST00000615540 COA6Q5JTJ3 125 aaKnown RBP6.84□□□□□ -1.31
PDLIM5-222ENST00000615540 CUL9Q8IWT3 2517 aa6.84□□□□□ -1.31
PDLIM5-222ENST00000615540 ELANEP08246 267 aa6.84□□□□□ -1.31
PDLIM5-222ENST00000615540 ZNF124Q15973 351 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 LGALS9BQ3B8N2 356 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 LGALS9CQ6DKI2 356 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 Q6ZS46 218 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 MRPL53Q96EL3 112 aaKnown RBP6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 ZNF625Q96I27 306 aaPredicted RBP6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 PRADC1Q9BSG0 188 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 KIR2DL5BA0A0G2JN68 375 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 KIR2DL5BA0A0G2JPC4 375 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 KIR2DL5AQ8N109 375 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 CACNA1BQ00975 2339 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 IGKV2-29A2NJV5 120 aaPredicted RBP6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 PCP4P48539 62 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 RPL36AP83881 106 aaKnown RBP6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 FOXI2Q6ZQN5 318 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 ZNRF2Q8NHG8 242 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 RPL36ALQ969Q0 106 aaKnown RBP6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 CRIP1P50238 77 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 TIMM21Q9BVV7 248 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 JPT2Q9H910 190 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 MYMXA0A1B0GTQ4 84 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 SPINK8P0C7L1 97 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 PGPEP1Q9NXJ5 209 aa6.83□□□□□ -1.32
PDLIM5-222ENST00000615540 CCL24O00175 119 aa6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 IGHG2P01859 326 aa6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 BVES-AS1Q5T3Y7 98 aa6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 UBE2V1Q13404 147 aa6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 C9orf47Q6ZRZ4 202 aa6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 OR5A1Q8NGJ0 315 aa6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 NOP10Q9NPE3 64 aaKnown RBP6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 SCRT2Q9NQ03 307 aa6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 ARHGAP32A7KAX9 2087 aa6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 PMVKQ15126 192 aa6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 CFAP161Q6P656 301 aa6.82□□□□□ -1.32
PDLIM5-222ENST00000615540 EDN2P20800 178 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 TTTY13Q9BZ97 58 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 A0A087WX48 190 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 C2orf70A6NJV1 201 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 LINC00158P58513 81 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 Q8N1Y9 231 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 RNF114Q9Y508 228 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 IGLV2-11P01706 119 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 IGHV4-31P0DP07 118 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 PAX2Q02962 417 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 MBD6Q96DN6 1003 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 TMEM141Q96I45 108 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 AKAP6Q13023 2319 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 A0A1B0GXF2 115 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 A0A1W2PPR1 153 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 CD5LO43866 347 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 HLA-DRB4P13762 266 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 MRPL52Q86TS9 123 aaKnown RBP6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 HLA-DRB4X5D2U9 266 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 RPL39P62891 51 aaKnown RBP6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 COPS9Q8WXC6 57 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 U3KQE9 123 aa6.81□□□□□ -1.32
PDLIM5-222ENST00000615540 GAGE6Q13070 117 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 CLPSL2Q6UWE3 100 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 ZNF48Q96MX3 618 aaPredicted RBP6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 ZFHX3Q15911 3703 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 TRBV7-9A0A0J9YWB2 115 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 ANKRD39Q53RE8 183 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 Q6ZQT7 251 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 CEND1Q8N111 149 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 NBASA2RRP1 2371 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 ZNF318Q5VUA4 2279 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 MYCNOSP40205 109 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 C18orf65Q6ZTR6 163 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 ZNF843Q8N446 348 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 MDFICQ9P1T7 246 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 DSCAMO60469 2012 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 TRAV8-2A0A0B4J237 113 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 M0R2P5 195 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 TSSC4Q9Y5U2 329 aaPredicted RBP6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 DMXL1Q9Y485 3027 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 ACACAQ13085 2346 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 VWC2LB2RUY7 222 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 ATP6V0BQ99437 205 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 ZFAND3Q9H8U3 227 aa6.8□□□□□ -1.32
PDLIM5-222ENST00000615540 PRSS29PA6NIE9 313 aa6.79□□□□□ -1.32
PDLIM5-222ENST00000615540 TMEM238C9JI98 176 aa6.79□□□□□ -1.32
PDLIM5-222ENST00000615540 PLEKHB2Q96CS7 222 aa6.79□□□□□ -1.32
PDLIM5-222ENST00000615540 MLST8Q9BVC4 326 aa6.79□□□□□ -1.32
PDLIM5-222ENST00000615540 ERG28Q9UKR5 140 aa6.79□□□□□ -1.32
PDLIM5-222ENST00000615540 CTRLP40313 264 aa6.79□□□□□ -1.32
PDLIM5-222ENST00000615540 MALRD1Q5VYJ5 2156 aa6.79□□□□□ -1.32
PDLIM5-222ENST00000615540 TRBV6-1A0A0K0K1D8 114 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms