RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, human

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-210	ENST00000600689	CLPSL1	A2RUU4	121 aa		13.97	□□□□□ -0.17
UPF1-210	ENST00000600689	GNRH2	O43555	120 aa		13.97	□□□□□ -0.17
UPF1-210	ENST00000600689	CRYBA4	P53673	196 aa		13.97	□□□□□ -0.17
UPF1-210	ENST00000600689	TAL2	Q16559	108 aa		13.97	□□□□□ -0.17
UPF1-210	ENST00000600689	IGHV3-64	A0A075B6Q5	118 aa		13.96	□□□□□ -0.17
UPF1-210	ENST00000600689	TSPAN13	O95857	204 aa		13.96	□□□□□ -0.17
UPF1-210	ENST00000600689	PSMG4	Q5JS54	123 aa		13.96	□□□□□ -0.17
UPF1-210	ENST00000600689	TMEM219	Q86XT9	240 aa		13.96	□□□□□ -0.17
UPF1-210	ENST00000600689	CCDC140	Q96MF4	163 aa		13.96	□□□□□ -0.17
UPF1-210	ENST00000600689	SCGB1A1	P11684	91 aa		13.96	□□□□□ -0.17
UPF1-210	ENST00000600689	SRD5A1	P18405	259 aa		13.96	□□□□□ -0.17
UPF1-210	ENST00000600689	TIMD4	Q96H15	378 aa		13.96	□□□□□ -0.17
UPF1-210	ENST00000600689	METTL26	Q96S19	204 aa		13.96	□□□□□ -0.17
UPF1-210	ENST00000600689	RNASE4	P34096	147 aa	Known RBP	13.96	□□□□□ -0.18
UPF1-210	ENST00000600689	PRTN3	P24158	256 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689	TMEM170B	Q5T4T1	132 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689		Q8N9W7	124 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689	C20orf173	Q96LM9	149 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689	C1QTNF4	Q9BXJ3	329 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689	XG	P55808	180 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689	C11orf71	Q6IPW1	123 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689	NEXN-AS1	Q8NBZ9	246 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689	RAX2	Q96IS3	184 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689	SLC50A1	Q9BRV3	221 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689	JPT2	Q9H910	190 aa		13.95	□□□□□ -0.18
UPF1-210	ENST00000600689	RPL39	P62891	51 aa	Known RBP	13.94	□□□□□ -0.18
UPF1-210	ENST00000600689		Q6ZS46	218 aa		13.94	□□□□□ -0.18
UPF1-210	ENST00000600689	LY6G5B	Q8NDX9	201 aa		13.94	□□□□□ -0.18
UPF1-210	ENST00000600689	CFAP126	Q5VTH2	177 aa		13.94	□□□□□ -0.18
UPF1-210	ENST00000600689	CDIP1	Q9H305	208 aa		13.94	□□□□□ -0.18
UPF1-210	ENST00000600689		F5H697	171 aa		13.94	□□□□□ -0.18
UPF1-210	ENST00000600689	ZFP36	P26651	326 aa	Known RBP	13.94	□□□□□ -0.18
UPF1-210	ENST00000600689	ANXA2R	Q3ZCQ2	193 aa		13.94	□□□□□ -0.18
UPF1-210	ENST00000600689	ZNF48	Q96MX3	618 aa	Predicted RBP	13.94	□□□□□ -0.18
UPF1-210	ENST00000600689	ORMDL2	Q53FV1	153 aa		13.93	□□□□□ -0.18
UPF1-210	ENST00000600689	SORL1	Q92673	2214 aa		13.93	□□□□□ -0.18
UPF1-210	ENST00000600689	C11orf86	A6NJI1	115 aa		13.93	□□□□□ -0.18
UPF1-210	ENST00000600689	GATA3	P23771	443 aa		13.93	□□□□□ -0.18
UPF1-210	ENST00000600689	MRAP2	Q96G30	205 aa		13.93	□□□□□ -0.18
UPF1-210	ENST00000600689	SRSF2	Q01130	221 aa	Known RBP	13.92	□□□□□ -0.18
UPF1-210	ENST00000600689	TOMM6	Q96B49	74 aa		13.92	□□□□□ -0.18
UPF1-210	ENST00000600689		A0A087WWL8	130 aa		13.92	□□□□□ -0.18
UPF1-210	ENST00000600689	ODF3B	A8MYP8	253 aa		13.92	□□□□□ -0.18
UPF1-210	ENST00000600689	CREBBP	Q92793	2442 aa		13.92	□□□□□ -0.18
UPF1-210	ENST00000600689	TCL1B	O95988	128 aa		13.92	□□□□□ -0.18
UPF1-210	ENST00000600689	TMEM190	Q8WZ59	177 aa		13.92	□□□□□ -0.18
UPF1-210	ENST00000600689	IGHV3-11	P01762	117 aa		13.91	□□□□□ -0.18
UPF1-210	ENST00000600689	TP53TG1	Q9Y2A0	90 aa		13.91	□□□□□ -0.18
UPF1-210	ENST00000600689	TMEM238L	A0A1B0GVL6	79 aa		13.91	□□□□□ -0.18
UPF1-210	ENST00000600689		A6NJY4	79 aa		13.91	□□□□□ -0.18
UPF1-210	ENST00000600689	FAM74A4	Q5TZK3	123 aa		13.91	□□□□□ -0.18
UPF1-210	ENST00000600689	CARD19	Q96LW7	228 aa		13.9	□□□□□ -0.18
UPF1-210	ENST00000600689	TRBV12-3	P01733	135 aa		13.9	□□□□□ -0.18
UPF1-210	ENST00000600689	OPRPN	Q99935	248 aa	Predicted RBP	13.9	□□□□□ -0.18
UPF1-210	ENST00000600689	BEX4	Q9NWD9	120 aa	Predicted RBP	13.9	□□□□□ -0.18
UPF1-210	ENST00000600689	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	13.9	□□□□□ -0.19	2e-8	■■■■■ 31.3
UPF1-210	ENST00000600689	ASIP	P42127	132 aa		13.89	□□□□□ -0.19
UPF1-210	ENST00000600689	DPH3P1	Q9H4G8	78 aa		13.89	□□□□□ -0.19
UPF1-210	ENST00000600689	PKD1L2	Q7Z442	2459 aa		13.89	□□□□□ -0.19
UPF1-210	ENST00000600689	TRAV12-1	A0A0B4J245	112 aa		13.89	□□□□□ -0.19
UPF1-210	ENST00000600689	UNQ9165/PRO28630	Q6UXU0	137 aa		13.89	□□□□□ -0.19
UPF1-210	ENST00000600689		Q6ZUT4	128 aa		13.89	□□□□□ -0.19
UPF1-210	ENST00000600689	CFAP46	Q8IYW2	2715 aa		13.89	□□□□□ -0.19
UPF1-210	ENST00000600689	RBAKDN	A6NC62	111 aa		13.89	□□□□□ -0.19
UPF1-210	ENST00000600689	RNF183	Q96D59	192 aa		13.89	□□□□□ -0.19
UPF1-210	ENST00000600689	ZNF256	Q9Y2P7	627 aa	Predicted RBP	13.89	□□□□□ -0.19
UPF1-210	ENST00000600689	TSPEAR-AS2	P59090	65 aa		13.88	□□□□□ -0.19
UPF1-210	ENST00000600689	FAM110D	Q8TAY7	271 aa	Predicted RBP	13.88	□□□□□ -0.19
UPF1-210	ENST00000600689	UBTD1	Q9HAC8	227 aa		13.88	□□□□□ -0.19
UPF1-210	ENST00000600689	CSMD2	Q7Z408	3487 aa		13.88	□□□□□ -0.19
UPF1-210	ENST00000600689	SPG11	Q96JI7	2443 aa		13.87	□□□□□ -0.19
UPF1-210	ENST00000600689		Q8N6K4	173 aa		13.87	□□□□□ -0.19
UPF1-210	ENST00000600689	EEF1AKMT3	Q96AZ1	226 aa		13.87	□□□□□ -0.19
UPF1-210	ENST00000600689	IGKV3-20	P01619	116 aa		13.87	□□□□□ -0.19
UPF1-210	ENST00000600689	TRPT1	Q86TN4	253 aa	Known RBP	13.87	□□□□□ -0.19
UPF1-210	ENST00000600689	CRYBG3	Q68DQ2	2970 aa		13.87	□□□□□ -0.19
UPF1-210	ENST00000600689	CRYGD	P07320	174 aa		13.87	□□□□□ -0.19
UPF1-210	ENST00000600689	SAA4	P35542	130 aa		13.87	□□□□□ -0.19
UPF1-210	ENST00000600689	NDUFA11	Q86Y39	141 aa		13.87	□□□□□ -0.19
UPF1-210	ENST00000600689	OR10J6P	Q8NGY7	276 aa		13.87	□□□□□ -0.19
UPF1-210	ENST00000600689	CELSR2	Q9HCU4	2923 aa		13.86	□□□□□ -0.19
UPF1-210	ENST00000600689	C9orf47	Q6ZRZ4	202 aa		13.86	□□□□□ -0.19
UPF1-210	ENST00000600689		M0R1W7	72 aa		13.86	□□□□□ -0.19
UPF1-210	ENST00000600689	CRIP2	P52943	208 aa	Predicted RBP	13.86	□□□□□ -0.19
UPF1-210	ENST00000600689	ANKRD29	Q8N6D5	301 aa		13.86	□□□□□ -0.19
UPF1-210	ENST00000600689	C19orf84	I3L1E1	186 aa		13.85	□□□□□ -0.19
UPF1-210	ENST00000600689	ZFAND2A	Q8N6M9	145 aa		13.85	□□□□□ -0.19
UPF1-210	ENST00000600689		Q1RN00	199 aa		13.85	□□□□□ -0.19
UPF1-210	ENST00000600689	UTP20	O75691	2785 aa	Known RBP	13.85	□□□□□ -0.19
UPF1-210	ENST00000600689	TRAV2	A0A0B4J234	112 aa		13.84	□□□□□ -0.19
UPF1-210	ENST00000600689		A0A0J9YY99	117 aa		13.84	□□□□□ -0.19
UPF1-210	ENST00000600689		A8MWV9	139 aa		13.84	□□□□□ -0.19
UPF1-210	ENST00000600689		C9JAW5	83 aa		13.84	□□□□□ -0.19
UPF1-210	ENST00000600689	TSHB	P01222	138 aa		13.84	□□□□□ -0.19
UPF1-210	ENST00000600689	CFC1B	P0CG36	223 aa		13.84	□□□□□ -0.19
UPF1-210	ENST00000600689	CFC1	P0CG37	223 aa		13.84	□□□□□ -0.19
UPF1-210	ENST00000600689	UBE2D1	P51668	147 aa		13.84	□□□□□ -0.19
UPF1-210	ENST00000600689	C1orf122	Q6ZSJ8	110 aa		13.84	□□□□□ -0.19
UPF1-210	ENST00000600689	TRAV21	A0A0B4J279	112 aa		13.84	□□□□□ -0.19
UPF1-210	ENST00000600689	CD7	P09564	240 aa		13.84	□□□□□ -0.19

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