RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 GRIFINA4D1Z8 144 aa12.81□□□□□ -0.36
LIG1-216ENST00000598938 HTN3P15516 51 aa12.81□□□□□ -0.36
LIG1-216ENST00000598938 S100A4P26447 101 aaKnown RBP12.81□□□□□ -0.36
LIG1-216ENST00000598938 OR5I1Q13606 314 aa12.81□□□□□ -0.36
LIG1-216ENST00000598938 PTH2Q96A98 100 aa12.81□□□□□ -0.36
LIG1-216ENST00000598938 IL36BQ9NZH7 164 aa12.81□□□□□ -0.36
LIG1-216ENST00000598938 ZNF727A8MUV8 499 aa12.8□□□□□ -0.36
LIG1-216ENST00000598938 FAM74A3Q4VXF1 159 aa12.8□□□□□ -0.36
LIG1-216ENST00000598938 DAZAP1Q96EP5 407 aaKnown RBP12.8□□□□□ -0.36
LIG1-216ENST00000598938 IGLL5B9A064 214 aa12.79□□□□□ -0.36
LIG1-216ENST00000598938 H3BVH4 76 aa12.79□□□□□ -0.36
LIG1-216ENST00000598938 ARMS2P0C7Q2 107 aa12.79□□□□□ -0.36
LIG1-216ENST00000598938 FAM210BQ96KR6 192 aa12.79□□□□□ -0.36
LIG1-216ENST00000598938 IGHV4-4A0A075B6R2 117 aa12.78□□□□□ -0.36
LIG1-216ENST00000598938 F5H768 121 aa12.78□□□□□ -0.36
LIG1-216ENST00000598938 P01737 135 aa12.78□□□□□ -0.36
LIG1-216ENST00000598938 MED14OSP0DP75 135 aa12.78□□□□□ -0.36
LIG1-216ENST00000598938 ZNF876PQ49A33 203 aa12.78□□□□□ -0.36
LIG1-216ENST00000598938 NDUFAF3Q9BU61 184 aa12.78□□□□□ -0.36
LIG1-216ENST00000598938 SCRT2Q9NQ03 307 aa12.78□□□□□ -0.36
LIG1-216ENST00000598938 PCLOQ9Y6V0 5065 aa12.78□□□□□ -0.36
LIG1-216ENST00000598938 HOXA5P20719 270 aa12.77□□□□□ -0.37
LIG1-216ENST00000598938 TCTAP57738 103 aa12.77□□□□□ -0.37
LIG1-216ENST00000598938 LINC01551Q86U37 167 aa12.77□□□□□ -0.37
LIG1-216ENST00000598938 POM121L12Q8N7R1 296 aa12.77□□□□□ -0.37
LIG1-216ENST00000598938 NUDT10Q8NFP7 164 aa12.77□□□□□ -0.37
LIG1-216ENST00000598938 OR2D3Q8NGH3 330 aa12.77□□□□□ -0.37
LIG1-216ENST00000598938 NUDT11Q96G61 164 aa12.77□□□□□ -0.37
LIG1-216ENST00000598938 TRAV4A0A0B4J268 109 aa12.76□□□□□ -0.37
LIG1-216ENST00000598938 RPS20P60866 119 aaKnown RBP12.76□□□□□ -0.37
LIG1-216ENST00000598938 PIK3CD-AS1Q5SR53 167 aa12.76□□□□□ -0.37
LIG1-216ENST00000598938 TMEM88Q6PEY1 159 aa12.76□□□□□ -0.37
LIG1-216ENST00000598938 RNASE7Q9H1E1 156 aaKnown RBP12.76□□□□□ -0.37
LIG1-216ENST00000598938 APLNQ9ULZ1 77 aa12.76□□□□□ -0.37
LIG1-216ENST00000598938 SNAI2O43623 268 aa12.75□□□□□ -0.37
LIG1-216ENST00000598938 TMEM241Q24JQ0 296 aa12.75□□□□□ -0.37
LIG1-216ENST00000598938 SOHLH1Q5JUK2 328 aa12.75□□□□□ -0.37
LIG1-216ENST00000598938 FAM231DQ6ZW35 169 aa12.75□□□□□ -0.37
LIG1-216ENST00000598938 MUC4Q99102 2169 aa12.75□□□□□ -0.37
LIG1-216ENST00000598938 SSBP4Q9BWG4 385 aaPredicted RBP12.75□□□□□ -0.37
LIG1-216ENST00000598938 VPS13DQ5THJ4 4388 aa12.74□□□□□ -0.37
LIG1-216ENST00000598938 IGHV3-53P01767 116 aa12.74□□□□□ -0.37
LIG1-216ENST00000598938 ZNF479Q96JC4 524 aa12.74□□□□□ -0.37
LIG1-216ENST00000598938 RPP21Q9H633 154 aaKnown RBP12.74□□□□□ -0.37
LIG1-216ENST00000598938 NAT8Q9UHE5 227 aa12.74□□□□□ -0.37
LIG1-216ENST00000598938 PHLDA3Q9Y5J5 127 aa12.74□□□□□ -0.37
LIG1-216ENST00000598938 XKRY2A2RUG3 117 aa12.73□□□□□ -0.37
LIG1-216ENST00000598938 RS1O15537 224 aa12.73□□□□□ -0.37
LIG1-216ENST00000598938 OR5AL1P0C617 328 aa12.73□□□□□ -0.37
LIG1-216ENST00000598938 SFTA3P0C7M3 94 aa12.73□□□□□ -0.37
LIG1-216ENST00000598938 IGLC6P0CF74 106 aa12.73□□□□□ -0.37
LIG1-216ENST00000598938 GZMBP10144 247 aa12.73□□□□□ -0.37
LIG1-216ENST00000598938 FHL2Q14192 279 aa12.73□□□□□ -0.37
LIG1-216ENST00000598938 CFAP126Q5VTH2 177 aa12.73□□□□□ -0.37
LIG1-216ENST00000598938 SYT8Q8NBV8 401 aa12.73□□□□□ -0.37
LIG1-216ENST00000598938 OR4C5Q8NGB2 326 aa12.73□□□□□ -0.37
LIG1-216ENST00000598938 NXPH4O95158 308 aa12.72□□□□□ -0.37
LIG1-216ENST00000598938 RPL23P62829 140 aaKnown RBP12.72□□□□□ -0.37
LIG1-216ENST00000598938 DMRTA1Q5VZB9 504 aa12.72□□□□□ -0.37
LIG1-216ENST00000598938 ZFP82Q8N141 532 aa12.72□□□□□ -0.37
LIG1-216ENST00000598938 TRAV26-1A0A087WT03 109 aa12.71□□□□□ -0.37
LIG1-216ENST00000598938 GATCO43716 136 aaKnown RBP12.71□□□□□ -0.37
LIG1-216ENST00000598938 ERVFC1-1P60608 527 aa12.71□□□□□ -0.37
LIG1-216ENST00000598938 UQCC3Q6UW78 93 aa12.71□□□□□ -0.37
LIG1-216ENST00000598938 C15orf53Q8NAA6 179 aa12.71□□□□□ -0.37
LIG1-216ENST00000598938 OR10AG1Q8NH19 301 aa12.71□□□□□ -0.37
LIG1-216ENST00000598938 ISOC2Q96AB3 205 aa12.71□□□□□ -0.37
LIG1-216ENST00000598938 KMT2AQ03164 3969 aa12.7□□□□□ -0.38
LIG1-216ENST00000598938 A8MWV9 139 aa12.7□□□□□ -0.38
LIG1-216ENST00000598938 H3BNG1 76 aa12.7□□□□□ -0.38
LIG1-216ENST00000598938 M0R381 172 aa12.7□□□□□ -0.38
LIG1-216ENST00000598938 CIDEAO60543 219 aa12.7□□□□□ -0.38
LIG1-216ENST00000598938 SLAQ13239 276 aa12.7□□□□□ -0.38
LIG1-216ENST00000598938 FER1L6-AS1Q8NA97 138 aa12.7□□□□□ -0.38
LIG1-216ENST00000598938 VSIG2Q96IQ7 327 aa12.7□□□□□ -0.38
LIG1-216ENST00000598938 OSTCQ9NRP0 149 aa12.7□□□□□ -0.38
LIG1-216ENST00000598938 PRO0255Q9UI72 69 aa12.7□□□□□ -0.38
LIG1-216ENST00000598938 TRGV4A0A0C4DH28 118 aa12.69□□□□□ -0.38
LIG1-216ENST00000598938 LINC00862A6NCI5 91 aa12.69□□□□□ -0.38
LIG1-216ENST00000598938 ADIRFQ15847 76 aa12.69□□□□□ -0.38
LIG1-216ENST00000598938 CT83Q5H943 113 aa12.69□□□□□ -0.38
LIG1-216ENST00000598938 LGALS9CQ6DKI2 356 aa12.69□□□□□ -0.38
LIG1-216ENST00000598938 SFRP2Q96HF1 295 aa12.69□□□□□ -0.38
LIG1-216ENST00000598938 JPT2Q9H910 190 aa12.69□□□□□ -0.38
LIG1-216ENST00000598938 HHLA3Q9XRX5 114 aa12.69□□□□□ -0.38
LIG1-216ENST00000598938 A0A0J9YY99 117 aa12.68□□□□□ -0.38
LIG1-216ENST00000598938 A0A1W2PPQ1 181 aa12.68□□□□□ -0.38
LIG1-216ENST00000598938 CRYBA4P53673 196 aa12.68□□□□□ -0.38
LIG1-216ENST00000598938 UFSP1Q6NVU6 142 aa12.68□□□□□ -0.38
LIG1-216ENST00000598938 ZFP2Q6ZN57 461 aa12.68□□□□□ -0.38
LIG1-216ENST00000598938 COMMD7Q86VX2 200 aa12.68□□□□□ -0.38
LIG1-216ENST00000598938 MUC21A0A0G2JKD1 596 aa12.67□□□□□ -0.38
LIG1-216ENST00000598938 MUC21A0A140T8X8 626 aa12.67□□□□□ -0.38
LIG1-216ENST00000598938 F2Z2F3 143 aa12.67□□□□□ -0.38
LIG1-216ENST00000598938 PAX4O43316 350 aa12.67□□□□□ -0.38
LIG1-216ENST00000598938 GATA1P15976 413 aaPredicted RBP12.67□□□□□ -0.38
LIG1-216ENST00000598938 CTRLP40313 264 aa12.67□□□□□ -0.38
LIG1-216ENST00000598938 SPANXN1Q5VSR9 72 aa12.67□□□□□ -0.38
LIG1-216ENST00000598938 TPPP3Q9BW30 176 aa12.67□□□□□ -0.38
LIG1-216ENST00000598938 NACAE9PAV3 2078 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms